Hi.
Principally thanks for your helps.
I have tested amber9 and there weren't any problem. Then I have installed
ambertools. Now the test is running. but antechamber/tp && ./Run.tp takes
too many time. Does anything wrong about it. because it is running nearly 2
hours.
Thanks
2008/8/26 Ross Walker <ross.rosswalker.co.uk>
> Hi Selami,
>
>
>
> elsize.cc is a standalone program and so problems with its compilation will
> not affect any other calculations such as MD with sander or pmemd, analysis
> with ptraj etc.
>
>
>
> Also note that this is why we have the test cases in order to check that
> the installation is giving the correct answers. Make sure you run these for
> ambertools and for sander in both serial and parallel. If all pass or just
> have minor differences then everything is good.
>
>
>
> Good luck,
>
>
>
> Ross
>
>
>
> *From:* owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] *On
> Behalf Of *selami ercan
> *Sent:* Tuesday, August 26, 2008 3:57 AM
> *To:* amber.scripps.edu
> *Subject:* AMBER: installation amber on suse11.0
>
>
>
> hi!
> I was using suse 10.3 before installing suse 11.0. I also was using amber9
> with suse 10.3 and there was not any installation problems with it.
> but I installation on suse 11.0 gives error. the error is elsize.cc. I have
> searched it on net and saw a solution about it. the solution is adding
> #include <stdlib.h> and #include <string.h> to amberX/src/etc/elsize.cc.
> I tried it and installation finished succesfully. I want to learn that if
> these changes will make an error or any variations on calculations. and
> apart form this installation of dock gives compiler problems and I have
> solved them with a solution like that of amber.
>
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Received on Sun Aug 31 2008 - 06:07:14 PDT
