AMBER: PBCAL in MM_PBSA

From: Thomas Leonard <thomasj.bii.a-star.edu.sg>
Date: Mon, 11 Aug 2008 16:12:51 +0800 (SGT)

Hi,

I am calculating PBCALC for a protein-protein and protein-small molecule
sets.
My inputs are fine for protein-protein. but it is not working for small
molecules.

 Calculating energy / entropy contributions
    Calc contrib for ../01_gensnap/wtmol_com.crd.1
        Calc MM/GB/SAS
        Generate PDB
        Center PDB
        Calc PBSA
        /usr/local/amber/exe/pbsa -O -i pbsa.in -o pbsa_com.1.out -c
../01_gensnap/wtmol_com.crd.1 -p ../wtmol.top not successful


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Received on Wed Aug 13 2008 - 06:07:18 PDT
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