Amber Archive Jun 2004 by author
449 messages
:
Starting
Tue Jun 01 2004 - 06:53:00 PDT,
Ending
Thu Jul 01 2004 - 06:53:00 PDT
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A. Hungie
AMBER: free energy
(Fri Jun 04 2004 - 10:21:59 PDT)
AMBER: gibbs in amber8
(Fri Jun 04 2004 - 10:13:12 PDT)
aldo jongejan
Re: AMBER: cluster MD conformations from sander
(Fri Jun 11 2004 - 01:22:40 PDT)
Amber admin
Re: AMBER: AMBPDB command requires libcxa.so.5
(Mon Jun 28 2004 - 08:12:45 PDT)
Andreas Svrcek-Seiler
Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander
(Wed Jun 16 2004 - 07:58:33 PDT)
Re: AMBER: why the enegy of native state of protein is high in GBSA calculation?
(Fri Jun 04 2004 - 08:15:03 PDT)
Andrew Box
AMBER: (no subject)
(Sun Jun 27 2004 - 20:29:34 PDT)
Andy Purkiss
Re: AMBER: image and restart problems
(Tue Jun 29 2004 - 06:05:48 PDT)
Annette Höglund
Re: AMBER: FEP error/early termination - why?
(Tue Jun 01 2004 - 07:34:53 PDT)
anshul.imtech.res.in
Re: AMBER: Simulated anealling
(Fri Jun 04 2004 - 13:56:50 PDT)
Re: AMBER: Simulated anealling
(Wed Jun 09 2004 - 07:41:56 PDT)
Re: AMBER: simulated anealling
(Thu Jun 03 2004 - 09:56:58 PDT)
AMBER: Simulated anealling
(Thu Jun 03 2004 - 07:30:42 PDT)
AMBER: simulated anealling
(Thu Jun 03 2004 - 07:12:55 PDT)
apw397.soton.ac.uk
Re: AMBER: question about replica exchange in amber8
(Wed Jun 02 2004 - 02:43:21 PDT)
Ben Cossins
Re: AMBER: nmanal problem
(Mon Jun 21 2004 - 09:40:50 PDT)
AMBER: nmanal problem
(Mon Jun 21 2004 - 08:45:20 PDT)
Bill Ross
Re: AMBER: MD & running time
(Tue Jun 22 2004 - 18:48:03 PDT)
Re: AMBER: leap.log warnings
(Mon Jun 21 2004 - 12:25:35 PDT)
Re: AMBER: leap.log warnings
(Mon Jun 21 2004 - 10:40:13 PDT)
Re: AMBER: leap.log warnings
(Sun Jun 20 2004 - 19:52:17 PDT)
Re: AMBER: The first and second derivatives
(Fri Jun 18 2004 - 14:02:22 PDT)
Re: AMBER: Z-DNA
(Thu Jun 17 2004 - 13:00:55 PDT)
Re: AMBER: RMSD calculations in ptraj and Carnal
(Tue Jun 15 2004 - 13:55:31 PDT)
Re: AMBER: RMSD calculations in ptraj and Carnal
(Tue Jun 15 2004 - 12:23:40 PDT)
Re: AMBER: Trajectory file
(Wed Jun 09 2004 - 14:19:36 PDT)
Re: AMBER: segmentation fault when running parmchk
(Tue Jun 08 2004 - 11:16:35 PDT)
Re: AMBER: Bad contacts
(Mon Jun 07 2004 - 18:37:16 PDT)
Re: AMBER: Sander & fix atoms
(Thu Jun 03 2004 - 14:06:04 PDT)
Re: AMBER: CARNAL- movement of an axis
(Thu Jun 03 2004 - 13:53:47 PDT)
Re: AMBER: Loading mol2 Files in XLEaP
(Thu Jun 03 2004 - 13:44:39 PDT)
RE: AMBER: Amber force field for protein-DNA system
(Tue Jun 01 2004 - 11:32:52 PDT)
Bimo Ario Tejo
Re: AMBER: High B-factor!!
(Tue Jun 22 2004 - 07:25:36 PDT)
Brent Krueger
AMBER: octavalent metal
(Fri Jun 25 2004 - 14:17:01 PDT)
bybaker.itsa.ucsf.edu
Re: AMBER: MD & running time
(Tue Jun 22 2004 - 21:29:58 PDT)
Thanks - Re: AMBER: MD & running time
(Tue Jun 22 2004 - 16:29:09 PDT)
Re: AMBER: Amber & mutation
(Thu Jun 10 2004 - 09:24:24 PDT)
AMBER: Amber & mutation
(Wed Jun 09 2004 - 17:53:58 PDT)
Re: AMBER: Bad contacts
(Wed Jun 09 2004 - 13:30:38 PDT)
Re: AMBER: Bad contacts
(Wed Jun 09 2004 - 10:02:01 PDT)
AMBER: Bad contacts
(Mon Jun 07 2004 - 17:44:37 PDT)
Re: AMBER: Sander & fix atoms
(Thu Jun 03 2004 - 15:36:24 PDT)
Re: AMBER: Sander & fix atoms
(Thu Jun 03 2004 - 15:32:53 PDT)
Re: AMBER: Sander & fix atoms
(Thu Jun 03 2004 - 13:59:50 PDT)
Re: AMBER: Sander & fix atoms
(Thu Jun 03 2004 - 13:54:55 PDT)
AMBER: Sander & fix atoms
(Thu Jun 03 2004 - 09:48:40 PDT)
cailliez
AMBER: jump in temperature + problem in trajectory files
(Mon Jun 28 2004 - 07:11:14 PDT)
AMBER: GB parameters for Calcium
(Wed Jun 23 2004 - 05:39:38 PDT)
AMBER: Calcium and GB
(Tue Jun 08 2004 - 04:38:58 PDT)
Carlos Simmerling
Re: AMBER: traj. analysis
(Wed Jun 30 2004 - 12:08:50 PDT)
Re: AMBER: GB+LES
(Wed Jun 30 2004 - 04:26:59 PDT)
Re: AMBER: image and restart problems
(Tue Jun 29 2004 - 07:57:42 PDT)
Re: AMBER: question about water molecule
(Mon Jun 28 2004 - 10:48:11 PDT)
Re: AMBER: Octahedron Box
(Mon Jun 28 2004 - 08:43:21 PDT)
Re: AMBER: free energy
(Mon Jun 28 2004 - 06:06:43 PDT)
Re: AMBER: restraints error
(Fri Jun 25 2004 - 11:19:34 PDT)
Re: AMBER: restraints error
(Fri Jun 25 2004 - 10:23:26 PDT)
Re: AMBER: Units of Charges on Atoms
(Thu Jun 24 2004 - 12:49:43 PDT)
Re: AMBER: Restrain or freeze molecule question?
(Thu Jun 24 2004 - 08:39:58 PDT)
Re: AMBER: amber8 parallel jobs
(Thu Jun 24 2004 - 05:17:05 PDT)
Re: AMBER: TOP file in AMBER7/8
(Mon Jun 21 2004 - 06:52:38 PDT)
Re: AMBER: MOIL-View question
(Wed Jun 16 2004 - 13:25:45 PDT)
Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander
(Wed Jun 16 2004 - 08:15:20 PDT)
Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander
(Wed Jun 16 2004 - 07:42:33 PDT)
Re: AMBER: MOIL-View question
(Wed Jun 16 2004 - 04:57:27 PDT)
Re: AMBER: Improper Torsional Parameters
(Mon Jun 14 2004 - 14:54:57 PDT)
Re: AMBER: question about force field
(Mon Jun 14 2004 - 09:14:18 PDT)
Re: AMBER: Bad contacts
(Wed Jun 09 2004 - 11:56:09 PDT)
Re: AMBER: old trajectory file (amber6) to new trajectory file ?
(Tue Jun 08 2004 - 04:37:48 PDT)
Re: AMBER: Bad contacts
(Mon Jun 07 2004 - 18:26:19 PDT)
Re: AMBER: why the enegy of native state of protein is high in GBSA calculation?
(Fri Jun 04 2004 - 04:52:40 PDT)
Re: AMBER: parallel Sander (amber8): run-time error under Irix
(Thu Jun 03 2004 - 08:03:43 PDT)
Carsten Detering
AMBER: bug in leap?
(Mon Jun 07 2004 - 16:14:30 PDT)
Cenk Andac
Re: AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP
(Wed Jun 30 2004 - 22:02:17 PDT)
AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP
(Wed Jun 30 2004 - 08:14:18 PDT)
AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP
(Wed Jun 30 2004 - 08:12:10 PDT)
AMBER: AMBPDB command requires libcxa.so.5
(Sat Jun 26 2004 - 08:16:52 PDT)
AMBER: Problem with menu bar in LEAP
(Fri Jun 25 2004 - 14:54:47 PDT)
Chunhu Tan
AMBER: Questions about pert.charge and atom type change.
(Wed Jun 30 2004 - 17:20:38 PDT)
AMBER: About TI with sander
(Mon Jun 28 2004 - 12:35:54 PDT)
Chutintorn Punwong
Re: AMBER: segmentation fault when running parmchk
(Tue Jun 08 2004 - 11:07:45 PDT)
Re: AMBER: segmentation fault when running parmchk
(Wed Jun 02 2004 - 12:11:22 PDT)
Re: AMBER: segmentation fault when running parmchk
(Wed Jun 02 2004 - 10:57:06 PDT)
darden
Re: AMBER: Periodic boundary simulation
(Tue Jun 01 2004 - 06:11:54 PDT)
Dat H. Nguyen
Re: AMBER: Problem with menu bar in LEAP
(Fri Jun 25 2004 - 15:09:00 PDT)
Re: AMBER: Core Dump ERROR When Using TIP4P
(Tue Jun 15 2004 - 14:21:28 PDT)
AMBER: Core Dump ERROR When Using TIP4P
(Thu Jun 10 2004 - 18:12:06 PDT)
David A. Case
Re: AMBER: Questions about pert.charge and atom type change.
(Wed Jun 30 2004 - 18:10:02 PDT)
Re: AMBER: Problems with processing SYBYL-Tripos pdb files in LEAP
(Wed Jun 30 2004 - 10:50:41 PDT)
Re: AMBER: problems in using glycam
(Wed Jun 30 2004 - 08:03:07 PDT)
Re: AMBER: Amber 8 installation error
(Tue Jun 29 2004 - 16:55:18 PDT)
Re: AMBER: Atom Labels
(Tue Jun 29 2004 - 13:54:37 PDT)
Re: AMBER: Question about dummy atoms
(Tue Jun 29 2004 - 10:24:56 PDT)
Re: AMBER: About TI with sander
(Tue Jun 29 2004 - 09:45:52 PDT)
Re: AMBER: Test run error in amber8 : IBM-AIX
(Tue Jun 29 2004 - 08:00:58 PDT)
Re: AMBER: Amber 8 installation error
(Tue Jun 29 2004 - 07:56:53 PDT)
Re: AMBER: question about building prmtop and inpcrd files in xleap
(Mon Jun 28 2004 - 09:02:37 PDT)
Re: AMBER: Amber8 compilation in IBM-AIX
(Mon Jun 28 2004 - 08:42:20 PDT)
Re: AMBER: (no subject)
(Sun Jun 27 2004 - 23:12:26 PDT)
Re: AMBER: "Total vdw box size" information is gone
(Sun Jun 27 2004 - 14:03:39 PDT)
Re: AMBER: AMBPDB command requires libcxa.so.5
(Sat Jun 26 2004 - 11:56:09 PDT)
Re: AMBER: -p4pg problem
(Sat Jun 26 2004 - 11:54:03 PDT)
Re: AMBER: restraints error
(Fri Jun 25 2004 - 12:26:56 PDT)
Re: AMBER: Amber 8 installation
(Fri Jun 25 2004 - 12:15:50 PDT)
Re: AMBER: restraints error
(Fri Jun 25 2004 - 10:32:48 PDT)
Re: AMBER: Born radii
(Fri Jun 25 2004 - 08:36:20 PDT)
Re: RE: AMBER: Amber 8 installation
(Fri Jun 25 2004 - 08:33:30 PDT)
Re: AMBER: Restrain or freeze molecule question?
(Thu Jun 24 2004 - 08:24:37 PDT)
Re: AMBER: MD & running time
(Wed Jun 23 2004 - 14:02:45 PDT)
Re: AMBER: GB parameters for Calcium
(Wed Jun 23 2004 - 11:10:23 PDT)
Re: AMBER: Problems in Amber MPI version (64 bits machine)
(Wed Jun 23 2004 - 10:58:07 PDT)
Re: AMBER: Box range in vacuum when restart MD
(Wed Jun 23 2004 - 09:06:29 PDT)
Re: AMBER: Problems in Amber MPI version (64 bits machine)
(Tue Jun 22 2004 - 17:31:25 PDT)
Re: AMBER: nmanal problem
(Mon Jun 21 2004 - 08:51:59 PDT)
Re: AMBER: leap.log warnings
(Mon Jun 21 2004 - 08:43:07 PDT)
Re: AMBER: solvate proteins in xleap/amber8
(Mon Jun 21 2004 - 08:42:47 PDT)
Re: AMBER: Changing MAXPR in Amber 8?
(Fri Jun 18 2004 - 13:34:43 PDT)
Re: AMBER: The first and second derivatives
(Fri Jun 18 2004 - 13:25:29 PDT)
Re: AMBER: Could not assign parameters
(Fri Jun 18 2004 - 12:04:57 PDT)
Re: AMBER: Deeper problem with the energetics of the system
(Fri Jun 18 2004 - 11:20:20 PDT)
Re: AMBER: The first and second derivatives
(Fri Jun 18 2004 - 11:18:34 PDT)
Re: AMBER: Using gibbs to calculate free energy
(Fri Jun 18 2004 - 08:14:55 PDT)
Re: AMBER: Nmode
(Thu Jun 17 2004 - 08:14:26 PDT)
Re: AMBER: Nmode
(Wed Jun 16 2004 - 21:20:10 PDT)
Re: AMBER: problems with extra points
(Wed Jun 16 2004 - 11:50:05 PDT)
Re: AMBER: binary files
(Wed Jun 16 2004 - 07:44:39 PDT)
Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander
(Wed Jun 16 2004 - 07:40:32 PDT)
Re: AMBER: DENSITY in constant pressure MD
(Tue Jun 15 2004 - 15:50:57 PDT)
Re: AMBER: The parallel problem for umbrella sampling in Amber 8
(Tue Jun 15 2004 - 15:55:20 PDT)
Re: AMBER: Core Dump ERROR When Using TIP4P
(Tue Jun 15 2004 - 15:28:36 PDT)
Re: AMBER: About umbrella sampling in Amber 8
(Tue Jun 15 2004 - 09:05:59 PDT)
Re: AMBER: Config file for installing Amber 8 on PC with Windows XP
(Mon Jun 14 2004 - 18:01:57 PDT)
Re: AMBER: Improper Torsional Parameters
(Mon Jun 14 2004 - 14:20:21 PDT)
Re: AMBER: parmcal problem
(Fri Jun 11 2004 - 15:37:53 PDT)
Re: AMBER: segmentation fault when running parmchk
(Fri Jun 11 2004 - 08:00:13 PDT)
Re: AMBER: Core Dump ERROR When Using TIP4P
(Fri Jun 11 2004 - 07:08:18 PDT)
Re: AMBER: old trajectory file (amber6) to new trajectory file ?
(Wed Jun 09 2004 - 19:16:26 PDT)
Re: AMBER: Calcium and GB
(Wed Jun 09 2004 - 19:10:26 PDT)
Re: AMBER: Amber Transition State Output
(Wed Jun 09 2004 - 18:54:23 PDT)
Re: AMBER: Amber Transition State Output
(Wed Jun 09 2004 - 15:55:14 PDT)
Re: AMBER: xleap solvatebox problem
(Wed Jun 09 2004 - 15:51:06 PDT)
Re: AMBER: Constant Pressure Problem of MD
(Mon Jun 07 2004 - 19:12:41 PDT)
Re: AMBER: gibbs in amber8
(Sat Jun 05 2004 - 20:33:37 PDT)
Re: AMBER: why the enegy of native state of protein is high in GBSA calculation?
(Fri Jun 04 2004 - 06:00:47 PDT)
Re: AMBER: amber8 compile on Lemieux
(Thu Jun 03 2004 - 19:39:58 PDT)
Re: AMBER: Simulated anealling
(Thu Jun 03 2004 - 19:34:17 PDT)
Re: AMBER: confusion about epsilon=4r for nmode calclation of nucleic acid
(Thu Jun 03 2004 - 19:31:06 PDT)
Re: AMBER: Loading mol2 Files in XLEaP
(Thu Jun 03 2004 - 15:02:07 PDT)
Re: AMBER: segmentation fault when running parmchk
(Wed Jun 02 2004 - 11:41:56 PDT)
Re: AMBER: sander of AMBER 8 doesn't work
(Wed Jun 02 2004 - 07:47:20 PDT)
Re: AMBER: Free energy in Amber8
(Wed Jun 02 2004 - 07:35:24 PDT)
Re: [pradipta_b.mail.jnu.ac.in: AMBER: Software to visualize normal modes!]
(Tue Jun 01 2004 - 16:24:54 PDT)
Re: AMBER: sander8 performance
(Tue Jun 01 2004 - 13:15:50 PDT)
Re: AMBER: Amber7: pdb format file
(Tue Jun 01 2004 - 12:23:47 PDT)
Re: AMBER: sander8 performance
(Tue Jun 01 2004 - 12:22:29 PDT)
Re: AMBER: Heme parameters
(Tue Jun 01 2004 - 12:20:56 PDT)
Re: AMBER: Free energy in Amber8
(Tue Jun 01 2004 - 12:17:34 PDT)
Re: AMBER: Amber force field for protein-DNA system
(Tue Jun 01 2004 - 11:40:15 PDT)
David E. Konerding DSD Staff
Re: AMBER: MOIL-View question
(Wed Jun 16 2004 - 15:30:47 PDT)
david.evans.ulsop.ac.uk
AMBER: PARSE radius for P
(Thu Jun 10 2004 - 10:59:30 PDT)
Difei Wang
AMBER: old trajectory file (amber6) to new trajectory file ?
(Mon Jun 07 2004 - 19:55:39 PDT)
AMBER: mm_pbsa test problem
(Wed Jun 02 2004 - 08:54:40 PDT)
Dr. Rainer Glaser
AMBER: unnatural base - RESP charges in ANTECHAMBER
(Mon Jun 07 2004 - 17:12:56 PDT)
Dr. Yong Duan
Re: AMBER: all_amino03.in discrepancy
(Mon Jun 21 2004 - 09:41:03 PDT)
Fang, Jianwen
RE: AMBER: questions on mm_pbsa
(Fri Jun 11 2004 - 07:59:18 PDT)
AMBER: mm_pbsa.pl question
(Thu Jun 03 2004 - 10:14:29 PDT)
fangyu liang
Re: AMBER: Amber 8 installation error
(Tue Jun 29 2004 - 15:52:29 PDT)
Re: AMBER: Amber 8 installation error
(Tue Jun 29 2004 - 15:31:28 PDT)
AMBER: Amber 8 installation error
(Tue Jun 29 2004 - 00:00:32 PDT)
RE: AMBER: Amber 8 installation
(Fri Jun 25 2004 - 11:03:06 PDT)
Re: RE: AMBER: Amber 8 installation
(Fri Jun 25 2004 - 00:34:45 PDT)
AMBER: Amber 8 installation
(Thu Jun 24 2004 - 15:24:43 PDT)
AMBER: Config file for installing Amber 8 on PC with Windows XP
(Mon Jun 14 2004 - 16:21:07 PDT)
Feng, Hanqiao (NIH/NCI)
RE: AMBER: sander of AMBER 8 doesn't work
(Wed Jun 02 2004 - 05:45:01 PDT)
AMBER: sander of AMBER 8 doesn't work
(Tue Jun 01 2004 - 11:39:56 PDT)
Filip Lankas
AMBER: NEC and Regatta
(Mon Jun 28 2004 - 04:47:26 PDT)
FyD
Re: AMBER: Problems with X.R.E.D.
(Fri Jun 25 2004 - 10:20:30 PDT)
Re: AMBER: unnatural base - RESP charges in ANTECHAMBER
(Tue Jun 08 2004 - 09:23:46 PDT)
Re: AMBER: Amber7:
(Thu Jun 03 2004 - 13:11:28 PDT)
Re: AMBER: Loading mol2 Files in XLEaP
(Thu Jun 03 2004 - 12:18:26 PDT)
Re: AMBER: Loading mol2 Files in XLEaP
(Thu Jun 03 2004 - 09:26:38 PDT)
Gabbar Daaku
AMBER: Amber8 compilation problems on AIX
(Tue Jun 29 2004 - 19:50:13 PDT)
German Sciaini
Re: AMBER: Atom Labels
(Wed Jun 30 2004 - 04:36:14 PDT)
AMBER: problems to run ptraj
(Tue Jun 22 2004 - 15:29:36 PDT)
Re: AMBER: leap.log warnings
(Tue Jun 22 2004 - 03:50:01 PDT)
Re: AMBER: problems with extra points
(Fri Jun 18 2004 - 04:08:18 PDT)
AMBER: problems with extra points
(Wed Jun 16 2004 - 09:29:45 PDT)
Golebiowski Jerome
AMBER: savepdb vs ambpdb
(Fri Jun 11 2004 - 08:17:40 PDT)
Grace Li
AMBER: traj. analysis
(Wed Jun 30 2004 - 12:05:07 PDT)
Guanglei Cui
Re: AMBER: Questions about pert.charge and atom type change.
(Wed Jun 30 2004 - 17:54:28 PDT)
Re: AMBER: N-terminal Arg charges in ff99 not 1.00
(Wed Jun 30 2004 - 14:13:55 PDT)
Re: AMBER: About TI with sander
(Mon Jun 28 2004 - 12:46:52 PDT)
Re: AMBER: Trajectory file
(Wed Jun 09 2004 - 13:27:16 PDT)
Re: AMBER: How to neutralize system?
(Wed Jun 09 2004 - 07:58:37 PDT)
Re: AMBER: antechamber
(Wed Jun 09 2004 - 07:05:02 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 12:45:56 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 11:30:05 PDT)
Re: AMBER: amber8 compile on Lemieux
(Thu Jun 03 2004 - 20:56:13 PDT)
Re: AMBER: Loading mol2 Files in XLEaP
(Thu Jun 03 2004 - 12:20:26 PDT)
AMBER: amber8 compile on Lemieux
(Thu Jun 03 2004 - 08:06:21 PDT)
Re: AMBER: Add Hydrogen bond through xLeap?
(Wed Jun 02 2004 - 07:06:47 PDT)
Re: AMBER: question about replica exchange in amber8
(Wed Jun 02 2004 - 06:58:32 PDT)
Guillaume Bollot
AMBER: Restrain or freeze molecule question?
(Thu Jun 24 2004 - 03:48:33 PDT)
AMBER: AMBER7 update force field
(Thu Jun 24 2004 - 06:23:44 PDT)
AMBER: AMBER7 : update force field gaff.dat and parm99.dat
(Thu Jun 24 2004 - 05:48:39 PDT)
Gustavo Pierdominici Sottile
AMBER: Heme parameters
(Tue Jun 01 2004 - 08:32:06 PDT)
Haijun Yang
Re: AMBER: Problems in Amber MPI version (64 bits machine)
(Wed Jun 23 2004 - 10:33:49 PDT)
AMBER: Problems in Amber MPI version (64 bits machine)
(Tue Jun 22 2004 - 14:57:07 PDT)
Helios Chen
AMBER: "Total vdw box size" information is gone
(Sun Jun 27 2004 - 00:57:50 PDT)
ian gould
Re: AMBER: Opteron-64bit work station
(Mon Jun 21 2004 - 09:34:33 PDT)
Ilyas Yildirim
AMBER: About DelPhi and GRASP
(Wed Jun 02 2004 - 21:10:07 PDT)
J. Zhang, Dr
Re: Re: AMBER: why the enegy of native state of protein is high in GBSA calculation?
(Sat Jun 05 2004 - 18:25:20 PDT)
AMBER: why the enegy of native state of protein is high in GBSA calculation?
(Fri Jun 04 2004 - 02:21:20 PDT)
Re: AMBER: question about replica exchange in amber8
(Wed Jun 02 2004 - 19:16:19 PDT)
AMBER: question about replica exchange in amber8
(Wed Jun 02 2004 - 02:24:24 PDT)
James W. Caldwell
Re: AMBER: xleap solvatebox problem
(Wed Jun 09 2004 - 15:49:07 PDT)
javier perez
AMBER: About Hbond calculations using ptraj
(Mon Jun 28 2004 - 10:43:37 PDT)
Jiayun
RE: AMBER: a question on MM-PBSA and Delphi
(Tue Jun 29 2004 - 02:54:46 PDT)
RE: AMBER: a question on MM-PBSA and Delphi
(Wed Jun 23 2004 - 11:00:17 PDT)
AMBER: a question on MM-PBSA and Delphi
(Wed Jun 23 2004 - 06:34:31 PDT)
Jiten
Re: AMBER: Test run error in amber8 : IBM-AIX
(Tue Jun 29 2004 - 18:19:43 PDT)
AMBER: Test run error in amber8 : IBM-AIX
(Tue Jun 29 2004 - 05:16:48 PDT)
Re: AMBER: Amber8 compilation in IBM-AIX
(Mon Jun 28 2004 - 17:48:25 PDT)
Re: AMBER: "Total vdw box size" information is gone
(Mon Jun 28 2004 - 07:45:39 PDT)
Re: AMBER: Amber8 compilation in IBM-AIX
(Mon Jun 28 2004 - 07:39:02 PDT)
AMBER: Amber8 compilation in IBM-AIX
(Mon Jun 28 2004 - 02:19:42 PDT)
Re: AMBER: simulated anealling
(Wed Jun 02 2004 - 21:02:00 PDT)
Re: AMBER: Re: AMBER
(Wed Jun 02 2004 - 18:48:37 PDT)
AMBER: Gaussian Interface ?
(Wed Jun 02 2004 - 08:06:12 PDT)
Re: AMBER: Free energy in Amber8
(Tue Jun 01 2004 - 18:02:40 PDT)
Re: AMBER: Periodic boundary simulation
(Tue Jun 01 2004 - 03:14:59 PDT)
AMBER: Free energy in Amber8
(Tue Jun 01 2004 - 03:11:54 PDT)
Joachim Reichelt
AMBER: ifort -parallel
(Fri Jun 11 2004 - 02:15:58 PDT)
John
AMBER: MMPBSA problem
(Thu Jun 03 2004 - 09:09:05 PDT)
John Mongan
Re: AMBER: Software to visualize normal modes!
(Tue Jun 01 2004 - 16:20:38 PDT)
Johnson Agbo
AMBER: Units of Charges on Atoms
(Thu Jun 24 2004 - 12:22:49 PDT)
Re: AMBER: The first and second derivatives
(Fri Jun 18 2004 - 14:31:15 PDT)
Re: AMBER: The first and second derivatives
(Fri Jun 18 2004 - 12:05:25 PDT)
AMBER: The first and second derivatives
(Fri Jun 18 2004 - 11:08:49 PDT)
Re: AMBER: Improper Torsional Parameters
(Thu Jun 17 2004 - 13:57:08 PDT)
AMBER: Improper Torsional Parameters
(Mon Jun 14 2004 - 13:41:12 PDT)
Re: AMBER: Amber Transition State Output
(Thu Jun 10 2004 - 22:28:05 PDT)
Re: AMBER: Amber Transition State Output
(Wed Jun 09 2004 - 17:33:58 PDT)
AMBER: Amber Transition State Output
(Wed Jun 09 2004 - 12:46:03 PDT)
Joseph Nachman
Re: AMBER: traj. analysis
(Wed Jun 30 2004 - 14:44:43 PDT)
Re: AMBER: RMSD calculations in ptraj and Carnal
(Mon Jun 21 2004 - 08:07:57 PDT)
Re: AMBER: MOIL-View question
(Wed Jun 16 2004 - 13:22:07 PDT)
Re: AMBER: RMSD calculations in ptraj and Carnal
(Wed Jun 16 2004 - 13:16:52 PDT)
Re: AMBER: MOIL-View question
(Wed Jun 16 2004 - 12:35:17 PDT)
Re: AMBER: RMSD calculations in ptraj and Carnal
(Tue Jun 15 2004 - 12:37:18 PDT)
AMBER: RMSD calculations in ptraj and Carnal
(Tue Jun 15 2004 - 11:24:38 PDT)
AMBER: MOIL-View question
(Tue Jun 15 2004 - 11:11:30 PDT)
AMBER: Trajectory file
(Wed Jun 09 2004 - 12:22:45 PDT)
Junmei Wang
RE: AMBER: Restrain or freeze molecule question?
(Thu Jun 24 2004 - 10:44:03 PDT)
Re: AMBER: unnatural base - RESP charges in ANTECHAMBER
(Mon Jun 07 2004 - 18:22:31 PDT)
jz7.duke.edu
AMBER: question about water molecule
(Mon Jun 28 2004 - 10:34:19 PDT)
AMBER: question about building prmtop and inpcrd files in xleap
(Mon Jun 28 2004 - 07:49:39 PDT)
RE: AMBER: question about xleap
(Thu Jun 03 2004 - 12:40:10 PDT)
Re: AMBER: question about xleap
(Thu Jun 03 2004 - 11:34:03 PDT)
AMBER: question about xleap
(Thu Jun 03 2004 - 10:19:27 PDT)
AMBER: Amber force field for protein-DNA system (again)
(Wed Jun 02 2004 - 10:31:56 PDT)
AMBER: Amber force field for protein-DNA system (again)
(Tue Jun 01 2004 - 12:51:59 PDT)
AMBER: Amber force field for protein-DNA system
(Tue Jun 01 2004 - 09:14:16 PDT)
Karl N. Kirschner
Re: AMBER: problems in using glycam
(Wed Jun 30 2004 - 08:29:37 PDT)
AMBER: Atom Labels
(Tue Jun 29 2004 - 13:36:22 PDT)
Karol Miaskiewicz
AMBER: Re: parallel Sander (amber8): run-time error under Irix
(Tue Jun 08 2004 - 13:30:38 PDT)
AMBER: Re: parallel Sander (amber8): run-time error under Irix
(Tue Jun 08 2004 - 13:04:14 PDT)
Re: AMBER: parallel Sander (amber8): run-time error under Irix
(Thu Jun 03 2004 - 12:15:05 PDT)
Re: AMBER: parallel Sander (amber8): run-time error under Irix
(Thu Jun 03 2004 - 08:29:06 PDT)
AMBER: parallel Sander (amber8): run-time error under Irix
(Thu Jun 03 2004 - 07:42:25 PDT)
Kazuo Koyano
Re: AMBER: free energy
(Mon Jun 28 2004 - 01:45:41 PDT)
Re: AMBER: PBCAL in mm-pbsa calculation
(Sun Jun 20 2004 - 23:14:56 PDT)
Kristina Furse
RE: AMBER: MD & running time
(Wed Jun 23 2004 - 12:53:13 PDT)
lei jia
Re: AMBER: paramitrization problem
(Tue Jun 08 2004 - 10:45:02 PDT)
RE: AMBER: paramitrization problem
(Tue Jun 08 2004 - 08:00:11 PDT)
AMBER: paramitrization problem
(Mon Jun 07 2004 - 15:12:37 PDT)
Linda Prengaman
Re: AMBER: MD & running time
(Tue Jun 22 2004 - 12:12:00 PDT)
AMBER: Checking Results?
(Thu Jun 10 2004 - 18:49:33 PDT)
Re: AMBER: LINMIN failure
(Thu Jun 10 2004 - 14:41:46 PDT)
Lubos Vrbka
Re: AMBER: -p4pg problem
(Sat Jun 26 2004 - 07:42:55 PDT)
Re: AMBER: -p4pg problem
(Sat Jun 26 2004 - 03:59:53 PDT)
Luis Gracia
Re: AMBER: RMSD calculations in ptraj and Carnal
(Tue Jun 15 2004 - 17:19:53 PDT)
Marcin Krol
AMBER: GB+LES
(Wed Jun 30 2004 - 02:43:27 PDT)
AMBER: Born radii
(Fri Jun 25 2004 - 04:24:48 PDT)
Re: AMBER: How to neutralize system?
(Wed Jun 09 2004 - 07:57:11 PDT)
Marek Dynowski
AMBER: POPE membrane, How to obtain prep and parm files?
(Sat Jun 12 2004 - 10:07:08 PDT)
Matheus Froeyen
AMBER: antechamber
(Wed Jun 09 2004 - 00:39:26 PDT)
Mengjuei Hsieh
Re: AMBER: Compiling Amber8 on Mac OS X
(Fri Jun 11 2004 - 15:59:14 PDT)
Re: AMBER: Compiling Amber8 on Mac OS X
(Thu Jun 10 2004 - 14:11:24 PDT)
Michael Dolan
AMBER: N-terminal Arg charges in ff99 not 1.00
(Wed Jun 30 2004 - 14:08:15 PDT)
Miguel
Re: AMBER: Periodic boundary simulation
(Tue Jun 01 2004 - 04:14:34 PDT)
Re: AMBER: Free energy in Amber8
(Tue Jun 01 2004 - 04:11:39 PDT)
Mizuguchi Mineyuki
Re: AMBER: LINMIN failure
(Thu Jun 10 2004 - 19:58:24 PDT)
AMBER: LINMIN failure
(Wed Jun 09 2004 - 19:40:16 PDT)
Nan Lin
AMBER: nmode with mm/pbsa
(Wed Jun 09 2004 - 18:18:15 PDT)
AMBER: antechamber/parmchk ATTN: needs revision
(Wed Jun 09 2004 - 11:48:55 PDT)
AMBER: Constant Pressure Problem of MD
(Mon Jun 07 2004 - 19:04:23 PDT)
AMBER: Partial Charge on ligand for MD & MM/PBSA
(Mon Jun 07 2004 - 19:11:25 PDT)
AMBER: Add Hydrogen bond through xLeap?
(Tue Jun 01 2004 - 23:25:18 PDT)
Nicolas Grima
Re: AMBER: Amber8 compilation problems on AIX
(Wed Jun 30 2004 - 00:12:19 PDT)
Re: AMBER: Amber8 compilation in IBM-AIX
(Mon Jun 28 2004 - 08:13:32 PDT)
Re: AMBER: Amber8 compilation in IBM-AIX
(Mon Jun 28 2004 - 03:55:59 PDT)
nlxc
Re: AMBER: PBCAL in mmpbsa
(Tue Jun 29 2004 - 17:29:51 PDT)
AMBER: PBCAL in mmpbsa
(Tue Jun 29 2004 - 11:17:25 PDT)
AMBER: PBCAL in MM/PBSA
(Fri Jun 25 2004 - 12:09:19 PDT)
AMBER: Deeper problem with the energetics of the system
(Fri Jun 18 2004 - 10:56:52 PDT)
AMBER: DENSITY in constant pressure MD
(Tue Jun 15 2004 - 11:17:41 PDT)
AMBER: Suface area parameter for fluorine in MM/PBSA
(Fri Jun 11 2004 - 16:38:30 PDT)
AMBER: PBCAL in mm-pbsa calculation
(Fri Jun 11 2004 - 10:26:21 PDT)
Oliver Hucke
Re: AMBER: free energy
(Fri Jun 04 2004 - 12:19:25 PDT)
Re: AMBER: sander8 performance
(Tue Jun 01 2004 - 12:46:06 PDT)
AMBER: sander8 performance
(Tue Jun 01 2004 - 10:53:46 PDT)
Peter Gannett
Re: AMBER: Amber7: pdb format file
(Tue Jun 01 2004 - 11:22:32 PDT)
Pradipta Bandyopadhyay
AMBER: High B-factor!!
(Tue Jun 22 2004 - 05:13:09 PDT)
AMBER: Software to visualize normal modes!
(Mon May 31 2004 - 21:42:39 PDT)
Rhonda Torres
Re: AMBER: nmode with mm/pbsa
(Thu Jun 10 2004 - 11:33:40 PDT)
Re: AMBER: simulated anealling
(Thu Jun 03 2004 - 11:05:58 PDT)
Re: AMBER: Amber force field for protein-DNA system
(Tue Jun 01 2004 - 10:24:57 PDT)
richard dimelow
AMBER: binary files
(Wed Jun 16 2004 - 06:29:48 PDT)
Robert Duke
Re: AMBER: NEC and Regatta
(Mon Jun 28 2004 - 05:38:27 PDT)
Re: AMBER: NEC and Regatta
(Mon Jun 28 2004 - 05:18:24 PDT)
Re: AMBER: MD & running time
(Wed Jun 23 2004 - 15:25:27 PDT)
Robyn Ayscue
RE: AMBER: Changing MAXPR in Amber 8?
(Fri Jun 18 2004 - 13:03:06 PDT)
AMBER: Changing MAXPR in Amber 8?
(Fri Jun 18 2004 - 12:08:13 PDT)
Re: AMBER: Trouble running molecular dynamics with an increase in temp in Sander
(Thu Jun 17 2004 - 08:35:34 PDT)
AMBER: Trouble running molecular dynamics with an increase in temp in Sander
(Wed Jun 16 2004 - 06:43:05 PDT)
Re: AMBER: Compiling Amber8 on Mac OS X
(Mon Jun 14 2004 - 11:41:15 PDT)
Re: AMBER: Compiling Amber8 on Mac OS X
(Mon Jun 14 2004 - 11:39:27 PDT)
AMBER: Compiling Amber8 on Mac OS X
(Thu Jun 10 2004 - 05:25:40 PDT)
Re: AMBER: LINMIN failure
(Thu Jun 10 2004 - 04:52:07 PDT)
Re: AMBER: Loading mol2 Files in XLEaP
(Fri Jun 04 2004 - 11:24:05 PDT)
Re: AMBER: Loading mol2 Files in XLEaP
(Thu Jun 03 2004 - 11:39:37 PDT)
AMBER: Loading mol2 files in XLEaP
(Thu Jun 03 2004 - 09:17:54 PDT)
AMBER: Loading mol2 Files in XLEaP
(Thu Jun 03 2004 - 09:14:00 PDT)
Ross Walker
RE: AMBER: N-terminal Arg charges in ff99 not 1.00
(Wed Jun 30 2004 - 14:26:22 PDT)
RE: AMBER: Amber 8 installation error
(Tue Jun 29 2004 - 16:08:21 PDT)
RE: AMBER: Problem with menu bar in LEAP
(Fri Jun 25 2004 - 15:12:13 PDT)
RE: RE: AMBER: Amber 8 installation
(Fri Jun 25 2004 - 10:27:23 PDT)
RE: AMBER: Amber 8 installation
(Thu Jun 24 2004 - 15:38:57 PDT)
RE: AMBER: MD & running time
(Tue Jun 22 2004 - 20:51:28 PDT)
RE: AMBER: Changing MAXPR in Amber 8?
(Fri Jun 18 2004 - 12:23:33 PDT)
RE: AMBER: LINMIN failure
(Thu Jun 10 2004 - 23:10:23 PDT)
RE: AMBER: LINMIN failure
(Thu Jun 10 2004 - 10:10:08 PDT)
RE: AMBER: xleap solvatebox problem
(Wed Jun 09 2004 - 15:48:12 PDT)
RE: AMBER: paramitrization problem
(Tue Jun 08 2004 - 10:31:10 PDT)
RE: AMBER: paramitrization problem
(Mon Jun 07 2004 - 15:24:15 PDT)
RE: AMBER: bug in leap?
(Mon Jun 07 2004 - 16:50:10 PDT)
RE: AMBER: question about xleap
(Thu Jun 03 2004 - 12:19:55 PDT)
RE: AMBER: question about xleap
(Thu Jun 03 2004 - 11:03:04 PDT)
RE: AMBER: sander of AMBER 8 doesn't work
(Tue Jun 01 2004 - 11:56:29 PDT)
RE: AMBER: Amber7: pdb format file
(Tue Jun 01 2004 - 11:49:31 PDT)
RE: AMBER: Amber force field for protein-DNA system
(Tue Jun 01 2004 - 11:09:37 PDT)
sachin patil
Re: AMBER: Problem with menu bar in LEAP
(Sun Jun 27 2004 - 10:01:30 PDT)
AMBER: Opteron-64bit work station
(Mon Jun 21 2004 - 09:18:16 PDT)
scopio
AMBER: Box range in vacuum when restart MD
(Wed Jun 23 2004 - 06:22:31 PDT)
Re: AMBER: leap.log warnings
(Tue Jun 22 2004 - 17:54:37 PDT)
AMBER: leap.log warnings
(Sun Jun 20 2004 - 18:18:40 PDT)
AMBER: question about force field
(Mon Jun 14 2004 - 08:05:57 PDT)
Re: AMBER: parmcal problem
(Thu Jun 10 2004 - 17:21:30 PDT)
AMBER: parmcal problem
(Thu Jun 10 2004 - 07:46:11 PDT)
AMBER: How to neutralize system?
(Wed Jun 09 2004 - 07:47:44 PDT)
Scott
AMBER: Problems with X.R.E.D.
(Fri Jun 25 2004 - 08:49:24 PDT)
Scott Brozell
Re: AMBER: Suface area parameter for fluorine in MM/PBSA
(Sun Jun 13 2004 - 01:05:02 PDT)
Re: AMBER: ifort -parallel
(Fri Jun 11 2004 - 08:36:36 PDT)
Re: AMBER: bug in leap?
(Thu Jun 10 2004 - 21:32:24 PDT)
Re: AMBER: Xleap
(Thu Jun 10 2004 - 13:36:25 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 11:11:15 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 10:53:34 PDT)
Re: AMBER: Loading mol2 Files in XLEaP
(Thu Jun 03 2004 - 14:49:13 PDT)
Re: AMBER: Install Amber8 under cygwin
(Tue Jun 01 2004 - 00:22:14 PDT)
sebnem
Re: AMBER: Nmode
(Wed Jun 16 2004 - 22:30:54 PDT)
AMBER: Nmode
(Wed Jun 16 2004 - 16:47:18 PDT)
Seonah Kim
AMBER: Octahedron Box
(Mon Jun 28 2004 - 08:30:34 PDT)
Shan, Jufang
AMBER: xleap solvatebox problem
(Thu Jun 10 2004 - 07:49:25 PDT)
AMBER: xleap solvatebox problem
(Wed Jun 09 2004 - 15:17:59 PDT)
Sichun Yang
AMBER: newer OPLS/AA?
(Mon Jun 21 2004 - 16:23:03 PDT)
SIVA
Re: AMBER: Constant Pressure Problem of MD
(Mon Jun 07 2004 - 20:53:39 PDT)
Sivanesan Dakshanamurthy
Re: AMBER: Could not assign parameters
(Fri Jun 18 2004 - 12:35:32 PDT)
AMBER: Could not assign parameters
(Fri Jun 18 2004 - 11:52:18 PDT)
Soon
AMBER: Periodic boundary simulation
(Tue Jun 01 2004 - 02:08:31 PDT)
spookie
AMBER: problem not with sander, but with mpich
(Mon Jun 28 2004 - 02:08:37 PDT)
Re: AMBER: -p4pg problem
(Sat Jun 26 2004 - 22:19:33 PDT)
Re: AMBER: -p4pg problem
(Sat Jun 26 2004 - 07:00:48 PDT)
AMBER: -p4pg problem
(Sat Jun 26 2004 - 01:34:40 PDT)
Re: AMBER: sander in parallel, amber8
(Fri Jun 25 2004 - 11:26:58 PDT)
RE: AMBER: Amber 8 installation
(Fri Jun 25 2004 - 11:08:21 PDT)
Re: AMBER: amber8 parallel jobs
(Fri Jun 25 2004 - 11:05:23 PDT)
AMBER: sander in parallel, amber8
(Fri Jun 25 2004 - 01:49:30 PDT)
Re: AMBER: amber8 parallel jobs
(Fri Jun 25 2004 - 06:42:09 PDT)
Re: AMBER: Amber 8 installation
(Thu Jun 24 2004 - 15:42:40 PDT)
AMBER: amber8 parallel jobs
(Wed Jun 23 2004 - 21:50:48 PDT)
Stef
Re: AMBER: sander in parallel, amber8
(Fri Jun 25 2004 - 11:11:09 PDT)
Stefano.Pieraccini.unimi.it
AMBER: cluster analysis
(Wed Jun 09 2004 - 04:19:40 PDT)
Steve Seibold
AMBER: image and restart problems
(Tue Jun 29 2004 - 05:56:52 PDT)
Sue Heavner
Re: AMBER: cluster analysis
(Thu Jun 10 2004 - 03:40:56 PDT)
Sébastien Osborne
AMBER: Question about dummy atoms
(Tue Jun 29 2004 - 10:16:30 PDT)
Thomas E. Cheatham, III
Re: AMBER: About Hbond calculations using ptraj
(Wed Jun 30 2004 - 11:11:05 PDT)
Re: AMBER: RMSD calculations in ptraj and Carnal
(Tue Jun 15 2004 - 13:06:38 PDT)
Thomas Steinbrecher
Re: AMBER: PBCAL in mmpbsa
(Tue Jun 29 2004 - 13:50:43 PDT)
Re: AMBER: PBCAL in MM/PBSA
(Fri Jun 25 2004 - 12:37:07 PDT)
RE: AMBER: a question on MM-PBSA and Delphi
(Wed Jun 23 2004 - 11:09:16 PDT)
Re: AMBER: a question on MM-PBSA and Delphi
(Wed Jun 23 2004 - 08:13:48 PDT)
Re: AMBER: PBCAL in mm-pbsa calculation
(Fri Jun 11 2004 - 12:53:21 PDT)
Re: AMBER: PBCAL in mm-pbsa calculation
(Fri Jun 11 2004 - 11:00:17 PDT)
Tim Meyer
Re: AMBER: Amber & mutation
(Wed Jun 09 2004 - 22:14:11 PDT)
Re: AMBER: cluster analysis
(Wed Jun 09 2004 - 06:28:15 PDT)
Ting Wang
AMBER: TOP file in AMBER7/8
(Mon Jun 21 2004 - 06:32:25 PDT)
AMBER: solvate proteins in xleap/amber8
(Mon Jun 21 2004 - 06:20:03 PDT)
Tomas Kubar
Re: AMBER: Units of Charges on Atoms
(Thu Jun 24 2004 - 12:48:36 PDT)
Re: AMBER: solvate proteins in xleap/amber8
(Tue Jun 22 2004 - 00:44:54 PDT)
Re: AMBER: xleap solvatebox problem
(Thu Jun 10 2004 - 01:58:51 PDT)
Re: AMBER: bug in leap?
(Tue Jun 08 2004 - 00:27:30 PDT)
Tru Huynh
AMBER: sander7 on quad opteron
(Thu Jun 03 2004 - 11:13:39 PDT)
Venkata S Koppuravuri
Re: AMBER: restraints error
(Fri Jun 25 2004 - 11:11:20 PDT)
AMBER: restraints error
(Fri Jun 25 2004 - 10:10:35 PDT)
Vidit Kumar
AMBER: Amber7:
(Thu Jun 03 2004 - 12:55:21 PDT)
AMBER: Re: AMBER
(Wed Jun 02 2004 - 18:19:08 PDT)
AMBER: Amber7: pdb format file
(Tue Jun 01 2004 - 11:13:03 PDT)
Viktor Hornak
Re: AMBER: Atom Labels
(Tue Jun 29 2004 - 13:53:41 PDT)
Re: AMBER: problem not with sander, but with mpich
(Mon Jun 28 2004 - 05:48:51 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 12:30:38 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 11:29:29 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 10:35:51 PDT)
Re: AMBER: Sander & fix atoms
(Thu Jun 03 2004 - 14:14:10 PDT)
Re: AMBER: parallel Sander (amber8): run-time error under Irix
(Thu Jun 03 2004 - 12:01:40 PDT)
Re: AMBER: question about xleap
(Thu Jun 03 2004 - 10:31:23 PDT)
Re: AMBER: Sander & fix atoms
(Thu Jun 03 2004 - 10:22:55 PDT)
Vojtech Klusak
Re: AMBER: all_amino03.in discrepancy
(Mon Jun 21 2004 - 02:36:09 PDT)
Wen Li
AMBER: cluster MD conformations from sander
(Thu Jun 10 2004 - 12:13:14 PDT)
AMBER: CARNAL RMS
(Mon Jun 07 2004 - 08:25:28 PDT)
AMBER: CARNAL- movement of an axis
(Thu Jun 03 2004 - 13:34:11 PDT)
xhu1.memphis.edu
AMBER: question about building initial structure
(Mon Jun 07 2004 - 10:19:13 PDT)
Xiaobing Tian
Re: AMBER: Thank you
(Thu Jun 10 2004 - 12:37:37 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 12:21:39 PDT)
Re: AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 11:33:43 PDT)
AMBER: Compile xleap (amber8) in linux Red Hat 8.0
(Tue Jun 08 2004 - 09:00:06 PDT)
xiaolin cheng
Re: AMBER: question about replica exchange in amber8
(Wed Jun 02 2004 - 07:23:30 PDT)
xiaowei li
AMBER: Z-DNA
(Thu Jun 17 2004 - 11:43:13 PDT)
Re: AMBER: confusion about epsilon=4r for nmode calclation of nucleic acid
(Thu Jun 03 2004 - 19:52:16 PDT)
AMBER: confusion about epsilon=4r for nmode calclation of nucleic acid
(Wed Jun 02 2004 - 20:15:29 PDT)
Xin Hu
AMBER: RED
(Tue Jun 01 2004 - 16:02:37 PDT)
Xioling Chuang
AMBER: Using gibbs to calculate free energy
(Fri Jun 18 2004 - 06:15:31 PDT)
AMBER: water BOX
(Mon Jun 07 2004 - 07:09:33 PDT)
YangPeng
AMBER: Xleap
(Thu Jun 10 2004 - 01:49:02 PDT)
Ye Mei
AMBER: information PROTON_INFO
(Thu Jun 03 2004 - 20:33:30 PDT)
Yongzhi Chen
AMBER: A problem about a sander parallel run
(Thu Jun 24 2004 - 11:40:37 PDT)
Yuhui Cheng
AMBER: The parallel problem for umbrella sampling in Amber 8
(Tue Jun 15 2004 - 14:14:07 PDT)
AMBER: About umbrella sampling in Amber 8
(Mon Jun 14 2004 - 18:45:44 PDT)
Yusuf Abdulghani
Re: AMBER: Compiling Amber8 on Mac OS X
(Fri Jun 11 2004 - 15:14:12 PDT)
Last message date
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Thu Jul 01 2004 - 06:53:00 PDT
Archived on
: Wed Apr 17 2024 - 05:53:14 PDT
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