Dear Hanqiao,
We will need more information in order to be able to help you here. What
architecture are running on? A single CPU desktop or a cluster?, what
opperating system, what compilers did you use to compile sander? Also, most
importantly have you run the test cases in $AMBERHOME/test do they all pass
or are there errors?
All the best
Ross
/\
\/
|\oss Walker
| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
| Tel:- +1 858 784 8889 | EMail:- ross.rosswalker.co.uk |
|
http://www.rosswalker.co.uk/ | PGP Key available on request |
> -----Original Message-----
> From: owner-amber.scripps.edu
> [mailto:owner-amber.scripps.edu] On Behalf Of Feng, Hanqiao (NIH/NCI)
> Sent: 01 June 2004 11:40
> To: 'amber.scripps.edu'
> Subject: AMBER: sander of AMBER 8 doesn't work
>
> Hi all
> I am new user of amber 8.0. I met problem to run sander.
> When I follow the
> tutorial under amber.scripps.edu, the eleap or xleap part
> works very well, I
> can got the sample prepared. when I issue sander, even for simple
> minimization, it stands there no response, no complain. When
> I check the
> .out file. it was empty. Could you please tell me what's wrong.
>
> Thanks,
> Hanqiao
>
> Lab of Biochemistry
> NCI/NIH
> Bethesda, MD
>
>
> --------------------------------------------------------------
> ---------
> The AMBER Mail Reflector
> To post, send mail to amber.scripps.edu
> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Tue Jun 01 2004 - 20:53:00 PDT
