Hi Fangyu,
This is a problem with the linux installation on your machine. Once again
the fountain of all knowledge (www.google.com) comes through:
http://www.google.com/search?sourceid=navclient&ie=UTF-8&oe=UTF-8&q=%2Fusr%2
Fbin%2Fld%3A+%2Fusr%2Flib%2Fcrt1%2Eo
Note the second entry:
http://softwareforums.intel.com/ids/board/message?board.id=11&message.id=119
6&jump=true
It seems that you may have a corrupted or missing installation of
glibc-devel.
In fact I suspect you are missing all of the development libraries for your
system. If you intend to compile any programs these are essential. It is
probably best for you to contact the person in charge of your system and ask
them to install the development RPM's for you. You should then have another
go at compiling Amber 8.
All the best
Ross
/\
\/
|\oss Walker
| Department of Molecular Biology TPC15 |
| The Scripps Research Institute |
| Tel:- +1 858 784 8889 | EMail:- ross.rosswalker.co.uk |
|
http://www.rosswalker.co.uk/ | PGP Key available on request |
> -----Original Message-----
> From: owner-amber.scripps.edu
> [mailto:owner-amber.scripps.edu] On Behalf Of fangyu liang
> Sent: 24 June 2004 15:25
> To: amber.scripps.edu
> Subject: AMBER: Amber 8 installation
>
> Hi,
>
> I am installing Amber 8 on a PC with latest Linux (SuSe 9.1)
> and Intel f90 compiler. Everything is fine until I run 'make
> serial'. Here is the entire message:
>
> Starting installation of Amber8 (serial) at Thu Jun 24
> 14:31:44 PDT 2004.
>
> mkdir ../exe
>
> mkdir: cannot create directory '../exe': File exists
>
> make: [serial] Error 1 (ignored)
>
> cd lib; make install
>
> make[1]: Entering directory '/home/owner/Desktop/amber8/src/lib'
>
> ifort -o new2oldparm new2oldparm.o nxtsec.o
>
> /usr/bin/ld: /usr/lib/crt1.o: No such file: No such file or directory
>
> make[1]: *** [new2oldparm] Error 1
>
> make[1]: Leaving directory '/home/owner/Desktop/amber8/src/lib'
>
> make: *** [serial] Error 2
>
> I used 'make serial -i' later on and tested it in the
> $AMBERHOME/test directory. Here is the message:
>
> cd dmp; ./Run.dmp
> .../../exe/sander: Command not found.
> ./Run.dmp: Program error
> make: *** [test.sander.no_lmod] Error 1
>
> Can someone please tell me what I did wrong? So I can have
> Amber8 working properly. Thank you very much!
>
> Sincerely,
>
> Fangyu Liang
>
>
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Received on Thu Jun 24 2004 - 23:53:01 PDT
