I'll ask our system manager to create a guest account on our machine, so
that you can ftp the file. Conversely, if you have a guest account on your
machine, I could ftp you the file myself.
Thanks,
Joseph
On Wed, 16 Jun 2004, Carlos Simmerling wrote:
> that's odd, I have looked at many, many trajectories
> and not run into this. I can't really debug it from the info
> you gave- maybe I can ftp the files from you and try it
> myself?
> carlos
>
> ----- Original Message -----
> From: "Joseph Nachman" <nachman.hera.med.utoronto.ca>
> To: <amber.scripps.edu>
> Sent: Wednesday, June 16, 2004 3:35 PM
> Subject: Re: AMBER: MOIL-View question
>
>
> > Hi -
> >
> > >
> > > 1) does the original (non-carnal) trajectory work?
> >
> > No, it doesn't work with the original trajectory either.
> >
> > > 2) try viewing the trajectory and checking to make sure
> > > the format is ok. The trajectory format is given on the
> > > AMBER web site.
> >
> > Yes, the file is in the right format.
> >
> > Joseph
> >
> >
> >
> > >
> > > carlos
> > >
> > > ----- Original Message -----
> > > From: "Joseph Nachman" <nachman.hera.med.utoronto.ca>
> > > To: <amber.scripps.edu>
> > > Sent: Tuesday, June 15, 2004 2:11 PM
> > > Subject: AMBER: MOIL-View question
> > >
> > >
> > > > hello all -
> > > >
> > > > I'm trying to visualize a trajectory generated by Carnal (Amber6
> version)
> > > > in MOIL-View.9.1. However, when I try to load the trajectory I get a
> > > > message that the file is not in AMBER format, although it is in AMBER
> > > > trajectory format and it works when I used it in either Carnal or
> ptraj.
> > > > The file contains no periodic box info. Any ideas?
> > > >
> > > > Thanks in advance,
> > > >
> > > > Joseph
> > > >
> > > > --
> > > > --------------------------------------------------------------------
> > > > Joseph Nachman Department of Biochemistry
> > > > nachman.hera.med.utoronto.ca University of Toronto
> > > > Medical Sciences Building
> > > > tel: +1 416 978-5510 Toronto, Ontario M5S 1A8
> > > > fax: +1 416 978-8548 Canada
> > > > --------------------------------------------------------------------
> > > >
> > >
> > -----------------------------------------------------------------------
> > > > The AMBER Mail Reflector
> > > > To post, send mail to amber.scripps.edu
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> > > >
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> > >
> >
> > --
> > --------------------------------------------------------------------
> > Joseph Nachman Department of Biochemistry
> > nachman.hera.med.utoronto.ca University of Toronto
> > Medical Sciences Building
> > tel: +1 416 978-5510 Toronto, Ontario M5S 1A8
> > fax: +1 416 978-8548 Canada
> > --------------------------------------------------------------------
> >
> > -----------------------------------------------------------------------
> > The AMBER Mail Reflector
> > To post, send mail to amber.scripps.edu
> > To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
> >
>
> -----------------------------------------------------------------------
> The AMBER Mail Reflector
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> To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
>
--
--------------------------------------------------------------------
Joseph Nachman Department of Biochemistry
nachman.hera.med.utoronto.ca University of Toronto
Medical Sciences Building
tel: +1 416 978-5510 Toronto, Ontario M5S 1A8
fax: +1 416 978-8548 Canada
--------------------------------------------------------------------
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Wed Jun 16 2004 - 22:53:00 PDT
