that's odd, I have looked at many, many trajectories
and not run into this. I can't really debug it from the info
you gave- maybe I can ftp the files from you and try it
myself?
carlos
----- Original Message -----
From: "Joseph Nachman" <nachman.hera.med.utoronto.ca>
To: <amber.scripps.edu>
Sent: Wednesday, June 16, 2004 3:35 PM
Subject: Re: AMBER: MOIL-View question
> Hi -
>
> >
> > 1) does the original (non-carnal) trajectory work?
>
> No, it doesn't work with the original trajectory either.
>
> > 2) try viewing the trajectory and checking to make sure
> > the format is ok. The trajectory format is given on the
> > AMBER web site.
>
> Yes, the file is in the right format.
>
> Joseph
>
>
>
> >
> > carlos
> >
> > ----- Original Message -----
> > From: "Joseph Nachman" <nachman.hera.med.utoronto.ca>
> > To: <amber.scripps.edu>
> > Sent: Tuesday, June 15, 2004 2:11 PM
> > Subject: AMBER: MOIL-View question
> >
> >
> > > hello all -
> > >
> > > I'm trying to visualize a trajectory generated by Carnal (Amber6
version)
> > > in MOIL-View.9.1. However, when I try to load the trajectory I get a
> > > message that the file is not in AMBER format, although it is in AMBER
> > > trajectory format and it works when I used it in either Carnal or
ptraj.
> > > The file contains no periodic box info. Any ideas?
> > >
> > > Thanks in advance,
> > >
> > > Joseph
> > >
> > > --
> > > --------------------------------------------------------------------
> > > Joseph Nachman Department of Biochemistry
> > > nachman.hera.med.utoronto.ca University of Toronto
> > > Medical Sciences Building
> > > tel: +1 416 978-5510 Toronto, Ontario M5S 1A8
> > > fax: +1 416 978-8548 Canada
> > > --------------------------------------------------------------------
> > >
> >
> -----------------------------------------------------------------------
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>
> --
> --------------------------------------------------------------------
> Joseph Nachman Department of Biochemistry
> nachman.hera.med.utoronto.ca University of Toronto
> Medical Sciences Building
> tel: +1 416 978-5510 Toronto, Ontario M5S 1A8
> fax: +1 416 978-8548 Canada
> --------------------------------------------------------------------
>
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Received on Wed Jun 16 2004 - 21:53:00 PDT
