Sorry to post it again. But I am hoping that I could find some answers
here.
Here is my old post:
Dear all,
First I apologize that I am so "new" to the Amber ff that I perhaps asked
the question not appropiatedly. After reading some related information
about Amber ff, I guess I could ask the question in another way.
I checked all the para*.dat files. Most of them are are both protein and
DNA (am I right?). But which one is the best for protein-DNA system?
Should I just use the latest parm99.dat. Also there is a question about
the parm99EP.dat (polarized ff with extra points). How does it work? What
kind of system or calculation is that for?
Thanks again!
Sincerely,
Jeny
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Received on Wed Jun 02 2004 - 18:53:00 PDT
