Re: AMBER: simulated anealling

From: <anshul.imtech.res.in>
Date: Thu, 3 Jun 2004 11:56:58 -0500 (GMT)

Hi Jitin,
Thanks for the reply. I would like to tell ypou that the output file is
reading the restraints quite well, Here is the part of the output:

LOADING THE CONSTRAINED ATOMS AS GROUPS

   5. REFERENCE ATOM COORDINATES


    ----- READING GROUP 1; TITLE:
 Group input for restrained atoms (A1-A166)
     GROUP 1 HAS HARMONIC CONSTRAINTS 2.00000
 GRP 1 RES 1 TO 167
      Number of atoms in this group = 2618
    ----- READING GROUP 2; TITLE:
 Group input for restrained atoms (A182-A276)
     GROUP 2 HAS HARMONIC CONSTRAINTS 2.00000
 GRP 2 RES 182 TO 276
      Number of atoms in this group = 1494
    ----- END OF GROUP READ -----


But in contrary to what others say, when i kept the group information at
the end it did not read it correctly.

Do you have any suggestions regarding my next mail abou the grid size??

With regards,
Anshul Awasthi

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Received on Thu Jun 03 2004 - 07:53:01 PDT
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