On Tue, Jun 01, 2004, jz7.duke.edu wrote:
>
> I am new to the Amber force field. I am wondering which parameter file I
> should use for a protein-DNA system? I saw parameters for protein and
> nucleic acid seperately. But is there a parameter file for both?
>
I'll pitch in yet another reply to those already made:
The "leaprc" files (such as leaprc.ff94 or leaprc.ff03) automatically load
both protein and nucleic acid force fields. Take a look at these files and
you can see what is going on.
....good luck...dac
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Received on Tue Jun 01 2004 - 19:53:01 PDT
