Hi Jeny,
You would need to load both the nucleotide (all_nucleic) and protein
(all_amino) lib files for this type of simulation.
Rhonda
Rhonda A. Torres
The Scripps Research Institute
Department of Molecular Biology
10550 N. Torrey Pines Rd. TPC 15
La Jolla, CA 92037
email: torres.scripps.edu
phone: (858) 784-9781
fax: (858) 784-8896
On Tue, 1 Jun 2004 jz7.duke.edu wrote:
> Dear all,
>
> I am new to the Amber force field. I am wondering which parameter file I
> should use for a protein-DNA system? I saw parameters for protein and
> nucleic acid seperately. But is there a parameter file for both?
>
> Thanks a lot!
>
> Best,
> Jeny
>
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Received on Tue Jun 01 2004 - 18:53:00 PDT
