Amber Archive Dec 2008: by date

Sunday, 30 November 2008
- AMBER: QM/MM and unpaired spin Markus Kaukonen
Monday, 1 December 2008
- Re: AMBER: seeking help regrading Zinc protein GBSA minimization Sergey Samsonov
- Re: AMBER: seeking help regrading Zinc protein GBSA minimization Carlos Simmerling
- AMBER: reg.dnasaveparm&tcrd balaji nagarajan
- Re: AMBER: reg.dnasaveparm&tcrd David A. Case
- Re: AMBER: N(CN2)- ion David A. Case
- Re: AMBER: Is there an easy way to calculate the electric field at the center of a group of atoms David A. Case
- Re: AMBER: Running Amber8 - Sander David A. Case
- RE: AMBER: QM/MM and unpaired spin Ross Walker
- RE: AMBER: reg.dnasaveparm&tcrd Ross Walker
- RE: AMBER: reg.dnasaveparm&tcrd balaji nagarajan
- RE: AMBER: reg.dnasaveparm&tcrd balaji nagarajan
- AMBER: How do you evaluate forces on a fixed atom? Bill K
- AMBER: makeDIST_RST error -- no map function for HH TYR Ryan Pavlovicz
- Re: AMBER: makeDIST_RST error -- no map function for HH TYR David A. Case
- AMBER: Variable PBCAL values in MM-PBSA calculations Daniel Oehme
- RE: AMBER: Variable PBCAL values in MM-PBSA calculations Ray Luo
Tuesday, 2 December 2008
- Re: AMBER: using packmol file in Amber oguz gurbulak
- Re: AMBER: using packmol file in Amber David A. Case
- Re: AMBER: using packmol file in Amber oguz gurbulak
- Re: AMBER: using packmol file in Amber David A. Case
- Re: AMBER: How do you evaluate forces on a fixed atom? David A. Case
- AMBER: Simulating peptide linkers with AMBER Sasha Buzko
- Re: AMBER: How do you evaluate forces on a fixed atom? Bill K
- Re: AMBER: QM/MM and unpaired spin Gustavo Seabra
- RE: AMBER: QM/MM and unpaired spin Ross Walker
Wednesday, 3 December 2008
- AMBER: DNA-Gold parameters Xioling Chuang
- AMBER: MM/GBSA Error during deccomposition N.R. Jena
- Re: AMBER: QM/MM and unpaired spin Gustavo Seabra
- Re: AMBER: subroutine Work : Jarynski work theorem Gustavo Seabra
- Re: AMBER: Problem running NEB in AMBER10 Chris C.
- AMBER: ptraj: how to select all non-hydrogen atoms Mingfeng Yang
- Re: AMBER: ptraj: how to select all non-hydrogen atoms Hannes Kopitz
- Re: AMBER: MM/GBSA Error during deccomposition Barbault Florent
- AMBER: reg unstability of structure in md balaji nagarajan
- AMBER: unable to open pdb file Taufik Al-Sarraj
- AMBER: makeDIST_RST computation of r3 value with IAT < 0 Ryan Pavlovicz
- Re: AMBER: Variable PBCAL values in MM-PBSA calculations Daniel Oehme
Thursday, 4 December 2008
- Re: AMBER: MM/GBSA Error during deccomposition N.R. Jena
- Re: AMBER: MM/GBSA Error during deccomposition Cristina Sisu
- Re: AMBER: reg unstability of structure in md Carlos Simmerling
- Re: AMBER: unable to open pdb file David A. Case
- Re: AMBER: MM/GBSA Error during deccomposition N.R. Jena
- Re: AMBER: using packmol file in Amber oguz gurbulak
- Re: AMBER: N(CN2)- ion babak minoofar
- Re: AMBER: using packmol file in Amber David A. Case
- AMBER: side chain expression Yunierkis Perez Castillo
- AMBER: LINMIN error in geometrically constrained minimization . MM-PB/SA conditions Alexander Metz
- RE: AMBER: Variable PBCAL values in MM-PBSA calculations Ray Luo
- Re: AMBER: MM/GBSA Error during deccomposition N.R. Jena
- RE: AMBER: reg unstability of structure in md balaji nagarajan
- Re: AMBER: reg unstability of structure in md N.R. Jena
Friday, 5 December 2008
- Re: AMBER: reg unstability of structure in md Carlos Simmerling
- Re: AMBER: N(CN2)- ion David A. Case
- Re: AMBER: using packmol file in Amber oguz gurbulak
- Re: AMBER: using packmol file in Amber David A. Case
- Re: AMBER: makeDIST_RST computation of r3 value with IAT < 0 David A. Case
- AMBER: compiling PMEMD spits out lots of -tp not supported and hangs . pmemd.f90 Hazard, E. Starr
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs . pmemd.f90 David Watson
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs . pmemd.f90 Robert Duke
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs @ pmemd.f90 Starr Hazard
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs @ pmemd.f90 Starr Hazard
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs . pmemd.f90 Robert Duke
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs . pmemd.f90 David Watson
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs @ pmemd.f90 Starr Hazard
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs . pmemd.f90 David Watson
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs . pmemd.f90 Robert Duke
- Re: AMBER: compiling PMEMD spits out lots of -tp not supported and hangs . pmemd.f90 sychen
Sunday, 7 December 2008
- AMBER: regad-tutorial-dna-polyAT balaji nagarajan
- Re: AMBER: regad-tutorial-dna-polyAT jani sahil
- AMBER: GB offset for proteins Sally Pias
- Re: AMBER: Variable PBCAL values in MM-PBSA calculations Daniel Oehme
- RE: AMBER: regad-tutorial-dna-polyAT balaji nagarajan
Monday, 8 December 2008
- AMBER: reg-adding ions balaji nagarajan
- AMBER: interaction energies Marina Grabar
- RE: AMBER: reg-adding ions Ross Walker
- AMBER: Problem with MMPBSA Daniel Emery
- AMBER: MM-PBSA : bad atom type: ZN jitrayut jitonnom
- Re: AMBER: interaction energies David A. Case
- AMBER: RESP GAUSSIAN AMBER SilasConnor.gmx.at
- RE: AMBER: Problem with MMPBSA Ray Luo
- AMBER: RE: bugfix 11 & 12 Ross Walker
- AMBER: how to add new solvent type in Amber iccy liu
- AMBER: Radial Distribution Function prabhakar g
- RE: AMBER: reg-adding ions balaji nagarajan
Tuesday, 9 December 2008
- AMBER: prep files ATP-MG++ and for phosphorylated threonine mirzo.jinr.ru
- Re: AMBER: prep files ATP-MG++ and for phosphorylated threonine Anselm Horn
- Re: AMBER: prep files ATP-MG++ and for phosphorylated threonine mirzo.jinr.ru
- AMBER: (no subject) waleed zalloum
- AMBER: Constant pH dynamics Beale, John
- RE: AMBER: reg-adding ions Ross Walker
- RE: AMBER: (no subject) Ross Walker
- RE: AMBER: (no subject) Scott Brozell
- Re: AMBER: Radial Distribution Function Gustavo Seabra
- Re: AMBER: Constant pH dynamics Adrian Roitberg
- Re: AMBER: Constant pH dynamics David A. Case
- Re: AMBER: Radial Distribution Function prabhakar g
- AMBER: parallel installation balaji nagarajan
- AMBER: forrtl severe(174) error with minimization and md john smith
Wednesday, 10 December 2008
- Re: AMBER: parallel installation David A. Case
- Re: AMBER: Radial Distribution Function Gustavo Seabra
- RE: AMBER: forrtl severe(174) error with minimization and md Ross Walker
- AMBER: reg-antichamber run balaji nagarajan
- AMBER: Building Amber 10 with Intel MKL and compiler mini howto Ben Eisenbraun
- Re: AMBER: reg-antichamber run David A. Case
- Re: AMBER: how to add new solvent type in Amber David A. Case
- AMBER: Running md using glycam in AMBER Neha Gandhi
Thursday, 11 December 2008
- Re: AMBER: reg-antichamber run FyD
- Re: AMBER: RESP GAUSSIAN AMBER FyD
- AMBER: Distorted ring... Waqas Nasir
- Re: AMBER: Distorted ring... Carlos Simmerling
- AMBER: tutorial A1, file missing readit.f ABEL Stephane 175950
- Re: AMBER: tutorial A1, file missing readit.f David A. Case
- AMBER: Pulling using restraintmask Dirar Homouz
- RE: AMBER: Running md using glycam in AMBER Matthew Tessier
- Re: AMBER: Pulling using restraintmask Alessandro Nascimento
- RE: AMBER: RESP GAUSSIAN AMBER Ross Walker
Friday, 12 December 2008
- Re: AMBER: N(CN2)- ion babak minoofar
- AMBER: DNA: GB solvent with salt Catein Catherine
- AMBER: reg.building ions balaji nagarajan
- Re: AMBER: RESP GAUSSIAN AMBER Francesco Pietra
- Re: AMBER: DNA: GB solvent with salt Carlos Simmerling
- Re: AMBER: reg.building ions David A. Case
- RE: AMBER: reg.building ions balaji nagarajan
- AMBER: building new ions CHAMI F.
- Re: AMBER: reg.building ions David A. Case
- AMBER: ff99 (PK/IDIVF) saurabh agrawal
- AMBER: ld: cannot find -lgcc_s moitrayee.mbu.iisc.ernet.in
- Re: AMBER: ff99 (PK/IDIVF) Carlos Simmerling
- RE: AMBER: RESP GAUSSIAN AMBER FyD
- Re: AMBER: ld: cannot find -lgcc_s David A. Case
- Re: AMBER: RESP GAUSSIAN AMBER FyD
- AMBER: reg.concentration of ions balaji nagarajan
- AMBER: RESP charge derivation using the Ante_R.E.D. and R.E.D. III programs... problems ABEL Stephane 175950
- Re: AMBER: RESP charge derivation using the Ante_R.E.D. and R.E.D. III programs... problems Jifeng Wang
- RE: AMBER: ff99 (PK/IDIVF) Ross Walker
- Re: AMBER: RESP charge derivation using the Ante_R.E.D. and R.E.D. III programs... problems FyD
- AMBER: RESP charge derivation using the Ante_R.E.D. and R.E.D. III programs... problems ABEL Stephane 175950
- Re: AMBER: RESP charge derivation using the Ante_R.E.D. and R.E.D. III programs... problems FyD
- RE: AMBER: RESP GAUSSIAN AMBER Ross Walker
- RE: AMBER: RESP GAUSSIAN AMBER Piotr Cieplak
- Re: AMBER: Radial Distribution Function prabhakar g
- RE: AMBER: RESP GAUSSIAN AMBER FyD
Saturday, 13 December 2008
- RE: AMBER: RESP GAUSSIAN AMBER FyD
- AMBER: sgi4700 the time of MD simulation is 30 minute for 1ps about 2500 atom using 1cpu llduan.itcc.nju.edu.cn
- AMBER: problem with toturial A3 (MM-PBSA) Maryam Hamzehee
- Re: AMBER: problem with toturial A3 (MM-PBSA) Carlos Simmerling
- Re: AMBER: sgi4700 the time of MD simulation is 30 minute for 1ps about 2500 atom using 1cpu steinbrt.rci.rutgers.edu
- AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC Atro Tossavainen
- Re: AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC Atro Tossavainen
Sunday, 14 December 2008
- Re: AMBER: problem with toturial A3 (MM-PBSA) Maryam Hamzehee
- Re: AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC David A. Case
- RE: AMBER: ff99 (PK/IDIVF) saurabh agrawal
- Re: AMBER: ff99 (PK/IDIVF) Carlos Simmerling
- Re: AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC Atro Tossavainen
- Re: AMBER: RESP GAUSSIAN AMBER Brent Krueger
- AMBER: Calculating the dielectrostatic constant from simulation? Jeffrey
- Re: AMBER: Radial Distribution Function Gustavo Seabra
Monday, 15 December 2008
- AMBER: pressure component chengtao.sjtu.edu.cn
- Re: AMBER: forrtl severe(174) error with minimization and md john smith
- Re: AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC Atro Tossavainen
- Re: AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC Atro Tossavainen
- Re: AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC Atro Tossavainen
- Re: AMBER: pressure component David A. Case
- AMBER: AMBER 10 PMEMD / SGI_MIPS Atro Tossavainen
- Re: AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC David A. Case
- AMBER: Initial velocities based on date and time are NOT changing ? Markus Kaukonen
- Re: AMBER: Initial velocities based on date and time are NOT changing ? David A. Case
- Re: AMBER: Calculating the dielectrostatic constant from simulation? Adrian Roitberg
- Re: AMBER: AMBER 10 PMEMD / SGI_MIPS Robert Duke
- AMBER: building new ions CHAMI F.
- Re: AMBER: building new ions FyD
- Re: AMBER: Compiling AMBER 10 on SGI MIPS and Sun SPARC Atro Tossavainen
- Re: AMBER: AMBER 10 PMEMD / SGI_MIPS Atro Tossavainen
- AMBER: launching a job works with sander.MPI and fail with pmemd.MPI unknown charset
- RE: AMBER: launching a job works with sander.MPI and fail with pmemd.MPI Ross Walker
- Re: AMBER: AMBER 10 PMEMD / SGI_MIPS Robert Duke
- Re: AMBER: using packmol file in Amber oguz gurbulak
- AMBER: relative weight of RDC constraints David Witte
- Re: AMBER: relative weight of RDC constraints David A. Case
- Re: AMBER: using packmol file in Amber Gustavo Seabra
- RE: AMBER: RESP GAUSSIAN AMBER Ross Walker
- Re: AMBER: RESP GAUSSIAN AMBER M. L. Dodson
- Re: AMBER: RESP GAUSSIAN AMBER FyD
- Re: AMBER: RESP GAUSSIAN AMBER M. L. Dodson
- Re: AMBER: RESP GAUSSIAN AMBER FyD
- Re: Re: AMBER: Calculating the dielectrostatic constant from simulation? Jeffrey
Tuesday, 16 December 2008
- Re: AMBER: pressure component chengtao.sjtu.edu.cn
- Re: AMBER: Initial velocities based on date and time are NOT changing ? Markus Kaukonen
- AMBER: RESP charge derivation using the Ante_R.E.D. and R.E.D. III ABEL Stephane 175950
- Re: AMBER: ff99 (PK/IDIVF) saurabh agrawal
- Re: AMBER: ff99 (PK/IDIVF) Carlos Simmerling
- Re: AMBER: RESP charge derivation using the Ante_R.E.D. and R.E.D. III FyD
- Re: AMBER: AMBER 10 PMEMD / SGI_MIPS Atro Tossavainen
- RE: AMBER: launching a job works with sander.MPI and fail with pmemd.MPI unknown charset
- Re: AMBER: problem with toturial A3 (MM-PBSA) Carlos Simmerling
- Fw: AMBER: launching a job works with sander.MPI and fail with pmemd.MPI Robert Duke
- Re: AMBER: launching a job works with sander.MPI and fail with pmemd.MPI Robert Duke
- RE: AMBER: AMBER 10 PMEMD / SGI_MIPS Ross Walker
- AMBER: solvent box again iccy liu
- AMBER: distance restraint in minimization Taufik Al-Sarraj
- RE: AMBER: solvent box again Ross Walker
- AMBER: alascan MUTANT_KEEP error Larry Layne
- Re: AMBER: distance restraint in minimization David A. Case
- Re: AMBER: solvent box again David A. Case
- Re: AMBER: distance restraint in minimization Taufik Al-Sarraj
- AMBER: distance restraint in minimization Taufik Al-Sarraj
- AMBER: restraintmask - reference file is not working Dirar Homouz
- Re: AMBER: restraintmask - reference file is not working Carlos Simmerling
- RE: AMBER: restraintmask - reference file is not working Dirar Homouz
- RE: AMBER: restraintmask - reference file is not working Dirar Homouz
- Re: AMBER: restraintmask - reference file is not working Carlos Simmerling
- AMBER: unsubscribe amber Prem Prakash Pathak
- AMBER: AMBER minimization problems Lili Peng
Wednesday, 17 December 2008
- RE: AMBER: RESP GAUSSIAN AMBER FyD
- AMBER: from dihe parameters to torsional energy Jeffrey
- RE: AMBER: restraintmask - reference file is not working Dirar Homouz
- Re: AMBER: restraintmask - reference file is not working Carlos Simmerling
- AMBER: comparison of MD trajectories recorded with pmemd and sander unknown charset
- Re: AMBER: distance restraint in minimization luzhenw1.msu.edu
- Re: AMBER: comparison of MD trajectories recorded with pmemd and sander Carlos Simmerling
- RE: AMBER: AMBER minimization problems Ross Walker
- Re: AMBER: AMBER minimization problems Lili Peng
- RE: AMBER: from dihe parameters to torsional energy Ross Walker
- Re: AMBER: comparison of MD trajectories recorded with pmemd and sander Adrian Roitberg
- Re: AMBER: comparison of MD trajectories recorded with pmemd and sander Robert Duke
- RE: AMBER: comparison of MD trajectories recorded with pmemd and sander Ross Walker
- RE: AMBER: from dihe parameters to torsional energy Ilyas Yildirim
- Re: AMBER: comparison of MD trajectories recorded with pmemd and sander Thomas Cheatham III
- Re: AMBER: comparison of MD trajectories recorded with pmemd and sander Robert Duke
- Fw: AMBER: comparison of MD trajectories recorded with pmemd and sander Robert Duke
- RE: AMBER: from dihe parameters to torsional energy Ross Walker
- Re: AMBER: comparison of MD trajectories recorded with pmemd and sander Robert Duke
- Re: AMBER: distance restraint in minimization Taufik Al-Sarraj
- Re: AMBER: distance restraint in minimization luzhenw1.msu.edu
- Re: AMBER: distance restraint in minimization Taufik Al-Sarraj
- Re: AMBER: distance restraint in minimization Jifeng Wang
- Re: AMBER: distance restraint in minimization David A. Case
- Re: AMBER: distance restraint in minimization Taufik Al-Sarraj
- Re: AMBER: distance restraint in minimization Taufik Al-Sarraj
- RE: AMBER: restraintmask - reference file is not working Dirar Homouz
- Re: AMBER: restraintmask - reference file is not working Carlos Simmerling
- Re: AMBER: distance restraint in minimization Taufik Al-Sarraj
- AMBER: alascan error Larry Layne
- AMBER: distance restraint between non-bonded molecules Taufik Al-Sarraj
- Re: RE: AMBER: from dihe parameters to torsional energy Jeffrey
Thursday, 18 December 2008
- Re: AMBER: distance restraint between non-bonded molecules Carlos Simmerling
- AMBER: Hydroxide ion in POL3 water D.J. Cole
- Re: AMBER: restraintmask - reference file is not working Carlos Simmerling
- Re: AMBER: comparison of MD trajectories recorded with pmemd and sander Gustavo Seabra
- Re: AMBER: distance restraint between non-bonded molecules Taufik Al-Sarraj
- RE: AMBER: AMBER minimization problems Ross Walker
- Re: AMBER: distance restraint between non-bonded molecules Ilyas Yildirim
- RE: AMBER: solvent box again iccy liu
- Re: AMBER: distance restraint between non-bonded molecules Taufik Al-Sarraj
- Re: AMBER: distance restraint between non-bonded molecules Ilyas Yildirim
- RE: AMBER: restraintmask - reference file is not working Dirar Homouz
Friday, 19 December 2008
- AMBER: Solvatebox problem musa özboyacı
- Re: AMBER: Solvatebox problem David A. Case
- Re: AMBER: distance restraint between non-bonded molecules Taufik Al-Sarraj
- Re: AMBER: distance restraint between non-bonded molecules Ilyas Yildirim
- Re: AMBER: distance restraint between non-bonded molecules Carlos Simmerling
- AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) wl2290.columbia.edu
- Re: AMBER: distance restraint between non-bonded molecules] Ilyas Yildirim
- AMBER: idecomp=2 & RRES/LRES group specification In Hee Park
Saturday, 20 December 2008
- AMBER: amber 9 compilation error with mvapich and intel compilers Amit Bajaj
- Re: AMBER: distance restraint between non-bonded molecules] Taufik Al-Sarraj
- AMBER: xleap (measureGeom) Taufik Al-Sarraj
- Re: AMBER: amber 9 compilation error with mvapich and intel compilers David A. Case
- Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) David A. Case
- Re: AMBER: AMBER minimization problems Lili Peng
- Re: AMBER: AMBER minimization problems Robert Duke
Sunday, 21 December 2008
- Re: AMBER: distance restraint between non-bonded molecules] Ilyas Yildirim
- AMBER: Error: tutorial one for md simulation of DNA Catein Catherine
- RE: AMBER: Error: tutorial one for md simulation of DNA balaji nagarajan
- RE: AMBER: Error: tutorial one for md simulation of DNA Catein Catherine
- Re: AMBER: amber 9 compilation error with mvapich and intel compilers Amit Bajaj
Monday, 22 December 2008
- AMBER: balaji nagarajan
- Re: AMBER: amber 9 compilation error with mvapich and intel compilers David A. Case
- Re: AMBER: amber 9 compilation error with mvapich and intelcompilers Robert Duke
- RE: AMBER: Ross Walker
- Re: AMBER: amber 9 compilation error with mvapich and intel compilers amit
- RE: AMBER: amber 9 compilation error with mvapich and intel compilers Ross Walker
- AMBER: Materials and methods Taufik Al-Sarraj
- AMBER: Re: Taufik Al-Sarraj
- RE: AMBER: amber 9 compilation error with mvapich and intel compilers amit
- Re: AMBER: xleap (measureGeom) Scott Brozell
- Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) wl2290.columbia.edu
- AMBER: Playstation 3 Benchmarks Andrew Ring
- Re: AMBER: Playstation 3 Benchmarks David Watson
- RE: AMBER: Playstation 3 Benchmarks Ross Walker
- AMBER: installation amber9 in fedora9 Vijay Manickam Achari
- Re: AMBER: installation amber9 in fedora9 Scott Brozell
Tuesday, 23 December 2008
- Re: AMBER: installation amber9 in fedora9 sobereva
- Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) David A. Case
- Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) wl2290.columbia.edu
- AMBER: AMBER10 AMBERTools antechamber Starr Hazard
- Re: AMBER: AMBER10 AMBERTools antechamber M. L. Dodson
- RE: AMBER: AMBER10 AMBERTools antechamber Ross Walker
- Re: AMBER: AMBER10 AMBERTools antechamber David A. Case
- AMBER: Switching function in NAMD musa özboyacı
- Re: AMBER: Switching function in NAMD Adrian Roitberg
- Re: AMBER: AMBER10 AMBERTools antechamber M. L. Dodson
- AMBER: about mmpbsa out data ecustipp
- AMBER: installation amber9 in fedora9 using bash shell Vijay Manickam Achari
- Re: AMBER: about mmpbsa out data steinbrt.rci.rutgers.edu
- AMBER: How to build a cubic box of a newly synthesized compound? Jeffrey
Wednesday, 24 December 2008
- Re:Re: AMBER: about mmpbsa out data ecustipp
- AMBER: xleap error Vijay Manickam Achari
- AMBER: Beale, John
- Re: AMBER: How to build a cubic box of a newly synthesized compound? M. L. Dodson
- Re: AMBER: xleap error David A. Case
- Re: AMBER: installation amber9 in fedora9 using bash shell David A. Case
- Re: AMBER: GB offset for proteins David A. Case
- AMBER: mpirun Permission denied. drugdesign
Thursday, 25 December 2008
- AMBER: a question about ff03ua oguz gurbulak
- AMBER: definition of dihedral in amber Jeffrey
- Re: AMBER: a question about ff03ua David A. Case
Friday, 26 December 2008
- AMBER: vertex atom mismatch ecustipp
- AMBER: (no subject) Rajendra P. OJHA
Sunday, 28 December 2008
- Re: AMBER: (no subject) ecustipp.163.com
Monday, 29 December 2008
- AMBER: SMD-related questions Alessandro Nascimento
- Re: AMBER: SMD-related questions M. L. Dodson
- AMBER: mwcovar limit? Carra, Claudio (JSC-SK)[USRA]
- AMBER: FAD RESP charges and parameters Cenk \(Jenk\) Andac
- AMBER: mdout file details aneesh cna
Tuesday, 30 December 2008
- Re: AMBER: FAD RESP charges and parameters FyD
- Re: AMBER: FAD RESP charges and parameters Cenk \(Jenk\) Andac
- Re: AMBER: FAD RESP charges and parameters FyD
- Re: AMBER: FAD RESP charges and parameters Cenk \(Jenk\) Andac
- Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) wl2290.columbia.edu
- Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) David A. Case
- Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) wl2290.columbia.edu
- Re: AMBER: SMD-related questions Jackie. J. Shen
- Re: AMBER: mpirun Permission denied. Jackie. J. Shen
- Re: AMBER: mpirun Permission denied. David Watson
Wednesday, 31 December 2008
- AMBER: periodic boundary Sally Pias
- Re: AMBER: mdout file details David A. Case
- AMBER: RMS plot Beale, John
- RE: AMBER: mwcovar limit? Ross Walker

Last message date: Fri Jan 02 2009 - 01:12:40 PST
Archived on: Mon Dec 23 2024 - 05:53:40 PST

Amber Archive Dec 2008 by date