Thanks for the guide you have given.
I have tried install amber9 in fedora9 using bash shell.
It indicated that the compilation was completed and I tried test run as given in INSTALL document.
I get the message as below:
[root.localhost test]# make test.serial
cd dmp; ./Run.dmp
diffing mdout.dmp.save with mdout.dmp
PASSED
==============================================================
cd adenine; ./Run.adenine
diffing mdout.adenine.save with mdout.adenine
PASSED
==============================================================
cd cytosine; ./Run.cytosine
diffing cytosine.out.save with cytosine.out
PASSED
==============================================================
cd nonper; ./Run.nonper
diffing mdout.nonper.save with mdout.nonper
PASSED
==============================================================
cd nonper; ./Run.nonper.belly
diffing mdout.belly.save with mdout.belly
PASSED
==============================================================
cd nonper; ./Run.nonper.belly.mask
diffing mdout.belly.mask.save with mdout.belly.mask
PASSED
==============================================================
cd nonper; ./Run.nonper.min
diffing mdout.min.save with mdout.min
PASSED
==============================================================
cd nonper; ./Run.cap
diffing mdout.cap.save with mdout.cap
PASSED
==============================================================
cd nonper; ./Run.nonper.nocut
diffing mdout.nocut.save with mdout.nocut
PASSED
==============================================================
cd tip4p; ./Run.tip4p
diffing mdout.tip4p.save with mdout.tip4p
PASSED
==============================================================
cd tip4p; ./Run.tip4p_nve
diffing mdout.tip4p_nve.save with mdout.tip4p_nve
PASSED
==============================================================
cd tip5p; ./Run.tip5p
diffing mdout.tip5p.save with mdout.tip5p
PASSED
==============================================================
cd tip5p; ./Run.tip5p_nve
diffing mdout.tip5p_nve.save with mdout.tip5p_nve
PASSED
==============================================================
cd 4096wat; ./Run.pure_wat
diffing mdout.pure_wat.save with mdout.pure_wat
PASSED
==============================================================
cd 4096wat; ./Run.pure_wat_nmr_temp_reg
diffing mdout.pure_wat_nmr_temp.save with mdout.pure_wat_nmr_temp
PASSED
==============================================================
cd 4096wat; ./Run.vrand
diffing mdout.vrand.save with mdout.vrand
PASSED
==============================================================
cd dhfr; ./Run.dhfr
diffing mdout.dhfr.save with mdout.dhfr
PASSED
==============================================================
cd dhfr; ./Run.dhfr.noshake
diffing mdout.dhfr.noshake.save with mdout.dhfr.noshake
PASSED
==============================================================
cd dhfr; ./Run.dhfr.min
diffing mdout.dhfr.min.save with mdout.dhfr.min
PASSED
==============================================================
cd gact_ips; ./Run.ips
diffing mdout.ips.save with mdout.ips
PASSED
==============================================================
cd gact_ips; ./Run.ipsnve
diffing mdout.ipsnve.save with mdout.ipsnve
PASSED
==============================================================
cd gact_ips; ./Run.ips_sgld
diffing mdout.ips_sgld.save with mdout.ips_sgld
PASSED
==============================================================
cd polarizable_water; ./Run.pol_wat
diffing mdout.polwat.save with mdout.polwat
PASSED
==============================================================
cd ubiquitin; ./Run.ubiquitin
diffing mdout.ubiquitin.save with mdout.ubiquitin
PASSED
==============================================================
diffing rstdip.save with rstdip
PASSED
==============================================================
diffing restrt.save with restrt
PASSED
==============================================================
diffing mden.save with mden
PASSED
==============================================================
diffing mdcrd.save with mdcrd
PASSED
==============================================================
diffing mdvel.save with mdvel
PASSED
==============================================================
cd dna_pol; ./Run.dna_pol
diffing mdout.dna_pol.save with mdout.dna_pol
PASSED
==============================================================
cd trx; ./Run.trx
diffing mdout.trx.save with mdout.trx
PASSED
==============================================================
cd trx; ./Run.trx.cpln
diffing mdout.trx.cpln.save with mdout.trx.cpln
PASSED
==============================================================
cd rdc; ./Run.dip
At line 848 of file _nmrcal.f (unit = 33, file = 'RST.allang')
Fortran runtime error: Cannot match namelist object name
./Run.dip: Program error
make: *** [test.sander.BASIC] Error 1
[root.localhost test]#
It indicate that program error.
Is there any error in the installation and how to over come about this?
Thanks in advance.
Vijay
Vijay Manickam Achari
(Phd Student c/o Prof Rauzah Hashim)
Chemistry Department,
University of Malaya,
Malaysia
vjramana.gmail.com
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Received on Wed Dec 24 2008 - 01:24:18 PST
