Amber Archive Dec 2008: by messages with attachments

AMBER: unable to open pdb file Taufik Al-Sarraj (Wed Dec 03 2008 - 18:44:09 PST)
1. 1YSAmin2.pdb (179087 bytes)
Re: AMBER: using packmol file in Amber oguz gurbulak (Thu Dec 04 2008 - 07:36:03 PST)
1. octane10.packmol.pdb (21295 bytes)
AMBER: LINMIN error in geometrically constrained minimization . MM-PB/SA conditions Alexander Metz (Thu Dec 04 2008 - 09:04:03 PST)
1. z_PBmin_LINMINerr.tar.gz (190193 bytes)
RE: AMBER: reg unstability of structure in md balaji nagarajan (Thu Dec 04 2008 - 20:32:21 PST)
1. md_1crdwithwaterbox.png (119442 bytes)
2. molecule.png (92423 bytes)
Re: AMBER: using packmol file in Amber oguz gurbulak (Fri Dec 05 2008 - 07:49:39 PST)
1. octane1.packmol.pdb (2301 bytes)
AMBER: regad-tutorial-dna-polyAT balaji nagarajan (Sun Dec 07 2008 - 20:45:10 PST)
1. polyAT_wat.prmtop.gz (118479 bytes)
2. PARTpolyAT_wat_md1.mdcrd.gz (561244 bytes)
AMBER: Radial Distribution Function prabhakar g (Mon Dec 08 2008 - 18:37:52 PST)
1. rdf.png (231871 bytes)
Re: AMBER: Radial Distribution Function prabhakar g (Tue Dec 09 2008 - 19:33:27 PST)
1. rdf1.png (236422 bytes)
RE: AMBER: RESP GAUSSIAN AMBER Ross Walker (Thu Dec 11 2008 - 20:00:27 PST)
1. resp_fit.htm (4974 bytes)
AMBER: sgi4700 the time of MD simulation is 30 minute for 1ps about 2500 atom using 1cpu llduan.itcc.nju.edu.cn (Sat Dec 13 2008 - 06:36:45 PST)
1. md1.out (9185 bytes)
Re: AMBER: using packmol file in Amber oguz gurbulak (Mon Dec 15 2008 - 07:57:08 PST)
1. resp_fitting.pdf (92260 bytes)
Re: AMBER: using packmol file in Amber Gustavo Seabra (Mon Dec 15 2008 - 08:39:53 PST)
1. put_ter_cards.awk (268 bytes)
Re: AMBER: AMBER 10 PMEMD / SGI_MIPS Atro Tossavainen (Tue Dec 16 2008 - 04:17:48 PST)
1. sun_sparc.f90.mpi (381 bytes)
AMBER: alascan MUTANT_KEEP error Larry Layne (Tue Dec 16 2008 - 11:07:51 PST)
1. alascan_coords.log (1505 bytes)
AMBER: AMBER minimization problems Lili Peng (Tue Dec 16 2008 - 23:14:00 PST)
1. min_wat.in (243 bytes)
Re: AMBER: AMBER minimization problems Lili Peng (Wed Dec 17 2008 - 08:35:58 PST)
1. peg5k_wat_min_vac.out (7238 bytes)
AMBER: alascan error Larry Layne (Wed Dec 17 2008 - 12:19:22 PST)
1. alascan_coords.log (1505 bytes)
2. snapshot_lig.crd.5.pdb (3115 bytes)
AMBER: Materials and methods Taufik Al-Sarraj (Mon Dec 22 2008 - 10:05:22 PST)
1. Methods.doc (5607 bytes)
Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) wl2290.columbia.edu (Mon Dec 22 2008 - 15:26:10 PST)
1. make_serial (261882 bytes)
2. warning_errors (125331 bytes)
AMBER: a question about ff03ua oguz gurbulak (Thu Dec 25 2008 - 06:06:33 PST)
1. octane.frcmod (737 bytes)
2. octane.prep (2245 bytes)
Re: AMBER: install amber 10 on linux with openSUSE 10.2 (x86-64) wl2290.columbia.edu (Tue Dec 30 2008 - 14:15:59 PST)
1. configure_lam (3582 bytes)

Amber Archive Dec 2008 by messages with attachments