RE: AMBER: reg-adding ions

From: Ross Walker <>
Date: Mon, 8 Dec 2008 08:33:18 -0800

Hi Balaji,


It is possible to specify the exact number of ions you want on the addions
line so you just need to work out how many of each type of counter you need
for the concentration you want. You know how many water molecules you have
so this shouldn't be too difficult.


Then just do say:


addions mymol Cl- 20

addions mymol Na+ 20


to get 20 x NaCl


Good luck,



From: [] On Behalf Of
balaji nagarajan
Sent: Monday, December 08, 2008 12:20 AM
To: amberforum
Subject: AMBER: reg-adding ions


Dear amber .,
I would like to to dynamics for a dna .,
is there any possible way to add salts in particular concentration
for example ...
magnesium chloride , cobalt chloride etc in the way how they
use it for crystallization ..
like milimolar concentration ..
we can add only ions separately

thanks in advance !



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