Amber Archive Feb 2004: by author

a b
- AMBER: adding ions to nucleic acids (Sun Feb 08 2004 - 02:47:19 PST)
- AMBER: the uses for Amber FFs (Tue Feb 03 2004 - 06:48:24 PST)
aini.UMDNJ.EDU
- AMBER: atom type for GBSA (Wed Feb 11 2004 - 07:13:04 PST)
- AMBER: question about the average structure from ptraj (Sun Feb 08 2004 - 11:33:23 PST)
- Re: AMBER: A general question (Tue Feb 03 2004 - 17:39:44 PST)
- AMBER: A general question (Tue Feb 03 2004 - 15:49:06 PST)
aldo jongejan
- Re: AMBER: Aldo's PMEMD bug (Mon Feb 09 2004 - 07:44:39 PST)
- AMBER: PMEMD and nmropt=1 (Thu Feb 05 2004 - 03:52:29 PST)
Amber Administration
- AMBER: multiple messages on the amber reflector (Tue Feb 17 2004 - 14:27:52 PST)
Ann P
- AMBER: Errors when running tleap (Wed Feb 25 2004 - 13:13:53 PST)
Ann P
- RE: AMBER: Errors when running tleap (Thu Feb 26 2004 - 11:21:03 PST)
Anna Schrey
- Re: AMBER: minimization output (Fri Feb 20 2004 - 01:07:40 PST)
Anselm Horn
- AMBER: MM-PBSA: molecular charges and active site water (Thu Feb 12 2004 - 07:23:05 PST)
Beale, John
- AMBER: PGA (Wed Feb 25 2004 - 05:09:46 PST)
- AMBER: DNA (Mon Feb 02 2004 - 05:31:51 PST)
Ben Cossins
- Re: AMBER: How to add ACE and NME groups? (Tue Feb 24 2004 - 08:47:43 PST)
- AMBER: The charge given by xleap from amber 5 (Fri Feb 20 2004 - 04:25:55 PST)
Bill Ross
- RE: AMBER: Errors when running tleap (Thu Feb 26 2004 - 11:47:05 PST)
- Re: AMBER: averaged structure with unknown elements (Wed Feb 25 2004 - 13:49:40 PST)
- Re: AMBER: Errors when running tleap (Wed Feb 25 2004 - 13:31:54 PST)
- RE: AMBER: add Na+ (Wed Feb 25 2004 - 10:31:43 PST)
- Re: AMBER: Star like (branching) molecule (Tue Feb 24 2004 - 15:51:10 PST)
- Re: AMBER: Star like (branching) molecule (Tue Feb 24 2004 - 15:40:13 PST)
- RE: AMBER: add Na+ (Tue Feb 24 2004 - 11:33:34 PST)
- RE: AMBER: add Na+ (Tue Feb 24 2004 - 11:07:07 PST)
- Re: AMBER: carnal (Tue Feb 24 2004 - 09:49:16 PST)
- Re: AMBER: problem with frcmod file (Mon Feb 23 2004 - 14:44:08 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 14:39:48 PST)
- RE: AMBER: how to use prep file (Mon Feb 23 2004 - 12:30:37 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 12:14:46 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 10:04:33 PST)
- Re: AMBER: Build a H+ ion in Leap? (Thu Feb 19 2004 - 13:22:08 PST)
- Re: AMBER: Build a H+ ion in Leap? (Thu Feb 19 2004 - 12:00:38 PST)
- Re: AMBER: distance-aromatic ring (Thu Feb 19 2004 - 11:41:32 PST)
- RE: AMBER: Close contact warnings (Thu Feb 19 2004 - 11:25:33 PST)
- Re: AMBER: Close contact warnings (Wed Feb 18 2004 - 11:29:19 PST)
- Re: AMBER: Close contact warnings (Wed Feb 18 2004 - 10:20:38 PST)
- Re: AMBER: (no subject) (Tue Feb 17 2004 - 13:17:39 PST)
- Re: AMBER: How to add H+ ion in leap? (Tue Feb 17 2004 - 13:09:01 PST)
- Re: AMBER: How to add H+ ion in leap? (Tue Feb 17 2004 - 12:29:17 PST)
- Re: AMBER: center of mass in CARNAL (Tue Feb 17 2004 - 12:25:43 PST)
- Re: AMBER: bad crd file (Mon Feb 16 2004 - 10:51:57 PST)
- Re: AMBER: carnal (Mon Feb 16 2004 - 10:37:54 PST)
- Re: AMBER: question about the average structure from ptraj (Sun Feb 08 2004 - 11:47:11 PST)
- Re: AMBER: adding ions to nucleic acids (Sun Feb 08 2004 - 11:40:50 PST)
- Re: Fwd: Re: AMBER: Lattice structures in xleap (Fri Feb 06 2004 - 14:21:12 PST)
- Re: AMBER: How to remove Cl- ions (Fri Feb 06 2004 - 08:35:27 PST)
- Re: AMBER: Re: ANAL problem (Thu Feb 05 2004 - 10:07:58 PST)
- Re: AMBER: ptraj (Thu Feb 05 2004 - 01:43:59 PST)
- Re: AMBER: carnal (Wed Feb 04 2004 - 11:40:31 PST)
- Re: AMBER: What does this error message mean? (Tue Feb 03 2004 - 10:40:15 PST)
- Re: AMBER: Carnal (Tue Feb 03 2004 - 10:14:02 PST)
Brandon Tefft
- Fwd: Re: AMBER: Lattice structures in xleap (Fri Feb 06 2004 - 13:27:50 PST)
Byungchan Kim
- Re: AMBER: NVE&polarizable force field (Tue Feb 03 2004 - 09:54:55 PST)
Carlos Simmerling
- Re: AMBER: LES methodology question (Fri Feb 20 2004 - 05:01:06 PST)
- Re: AMBER: LES (Thu Feb 19 2004 - 14:13:07 PST)
- Re: AMBER: LES (Thu Feb 19 2004 - 13:11:58 PST)
- Re: AMBER: LES (Thu Feb 19 2004 - 12:26:21 PST)
- Re: AMBER: tmd question (Thu Feb 19 2004 - 08:17:51 PST)
- Re: AMBER: moil-view question (Tue Feb 17 2004 - 05:38:59 PST)
- Re: AMBER: Run calculations for protein in Amber (Thu Feb 12 2004 - 05:18:32 PST)
- Re: AMBER: LES question (Wed Feb 11 2004 - 12:03:44 PST)
- Re: AMBER: LES question (Wed Feb 11 2004 - 11:43:58 PST)
- Re: AMBER: LES question (Wed Feb 11 2004 - 09:55:27 PST)
- Re: AMBER: LES question (Wed Feb 11 2004 - 05:48:48 PST)
- Re: AMBER: questions parm94/99 ff secondary structure (Fri Feb 06 2004 - 04:58:45 PST)
- Re: AMBER: A general question (Tue Feb 03 2004 - 16:13:09 PST)
- Re: AMBER: What does this error message mean? (Tue Feb 03 2004 - 08:30:56 PST)
- Re: AMBER: nucleic acid bases nonplanar during LES sim (Mon Feb 02 2004 - 13:56:00 PST)
Carsten Detering
- AMBER: sander + vlimit exceed... (Thu Feb 26 2004 - 15:16:31 PST)
- AMBER: check unit + saveamberparm (Wed Feb 18 2004 - 18:21:58 PST)
- AMBER: sander + ewald bomb (Wed Feb 18 2004 - 11:20:51 PST)
- Re: AMBER: antechamber + FAILED TO ACHIEVE SCF (Mon Feb 09 2004 - 14:02:10 PST)
- AMBER: antechamber + FAILED TO ACHIEVE SCF (Mon Feb 09 2004 - 11:17:41 PST)
- Re: AMBER: antechamber error (Mon Feb 09 2004 - 09:38:41 PST)
- AMBER: antechamber + mopac + MAXIMUM NUMBER OF ATOMIC ORBITALS EXCEEDED (Fri Feb 06 2004 - 17:50:46 PST)
- AMBER: antechamber + mopac +scf failed (Fri Feb 06 2004 - 16:11:22 PST)
- AMBER: antechamber error in test / differences in prmtop files (Thu Feb 05 2004 - 12:07:07 PST)
- AMBER: antechamber + mopac error (Wed Feb 04 2004 - 18:57:48 PST)
- AMBER: TI, angle parameters for nitrogen, frcmod (Mon Feb 02 2004 - 12:38:59 PST)
Chen, Ya
- AMBER: MCSS (Thu Feb 05 2004 - 20:33:48 PST)
Dave S Walker
- Re: AMBER: sander output (Fri Feb 20 2004 - 13:47:24 PST)
- Re: AMBER: sander output (Thu Feb 19 2004 - 15:55:59 PST)
- AMBER: cell dimensions (Mon Feb 02 2004 - 13:46:54 PST)
David A. Case
- Re: AMBER: size.h error (Thu Feb 26 2004 - 14:48:29 PST)
- Re: AMBER: averaged structure with unknown elements (Wed Feb 25 2004 - 14:15:25 PST)
- Re: AMBER: NMR restraints-Floating point exception (Wed Feb 25 2004 - 08:17:46 PST)
- Re: AMBER: add Na+ (Tue Feb 24 2004 - 11:35:06 PST)
- Re: AMBER: problem with frcmod file (Mon Feb 23 2004 - 14:43:59 PST)
- Re: AMBER: how to use prep file (Mon Feb 23 2004 - 12:19:30 PST)
- Re: AMBER: LCPO parameters in gbsa (Mon Feb 23 2004 - 10:51:46 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 08:49:58 PST)
- Re: AMBER: How to add ACE and NME groups? (Mon Feb 23 2004 - 08:47:05 PST)
- Re: AMBER: sander output (Thu Feb 19 2004 - 21:54:32 PST)
- Re: AMBER: prep files for modified bases (Thu Feb 19 2004 - 12:23:41 PST)
- Re: AMBER: compiling software(RESP) on MAC G5 (Thu Feb 19 2004 - 12:21:39 PST)
- Re: AMBER: Close contact warnings (Thu Feb 19 2004 - 08:30:15 PST)
- Re: AMBER: pmf calculation using gibbs. (Thu Feb 19 2004 - 08:27:33 PST)
- Re: AMBER: pmf calculation using gibbs. (Wed Feb 18 2004 - 20:45:57 PST)
- Re: AMBER: MD simulations with 2 molecules (Wed Feb 18 2004 - 14:15:04 PST)
- Re: AMBER: sander + ewald bomb (Wed Feb 18 2004 - 14:00:40 PST)
- Re: AMBER: Close contact warnings (Wed Feb 18 2004 - 11:34:24 PST)
- Re: AMBER: histidine and its various forms (Wed Feb 18 2004 - 07:58:44 PST)
- Re: AMBER: Close contact warnings (Tue Feb 17 2004 - 10:37:06 PST)
- Re: AMBER: Close contact warnings (Tue Feb 17 2004 - 08:39:22 PST)
- Re: AMBER: saveamberparm warning in leap? (Mon Feb 16 2004 - 17:04:17 PST)
- AMBER: multiple messages on the amber reflector (Mon Feb 16 2004 - 15:33:40 PST)
- Re: AMBER: TIP4P extended (Mon Feb 16 2004 - 09:37:32 PST)
- Re: AMBER: TIP4P (Mon Feb 16 2004 - 08:36:37 PST)
- Re: AMBER: SIGSEGV (Mon Feb 16 2004 - 08:30:18 PST)
- Re: AMBER: minimizating complex-protein with AMBER (Sun Feb 15 2004 - 21:14:02 PST)
- Re: AMBER: problem with tleap in Amber (Sun Feb 15 2004 - 21:10:31 PST)
- Re: AMBER: neutrality of charge in AMBER 7 (Sat Feb 14 2004 - 12:10:22 PST)
- Re: AMBER: MM-PBSA: molecular charges and active site water (Thu Feb 12 2004 - 20:06:56 PST)
- Re: AMBER: TER in amber (Thu Feb 12 2004 - 08:56:45 PST)
- Re: AMBER: Run calculations for protein in Amber-distance dependent dielectric function (Thu Feb 12 2004 - 08:41:16 PST)
- Re: AMBER: GBSA frequency update (Wed Feb 11 2004 - 22:09:34 PST)
- Re: AMBER: atom type for GBSA (Wed Feb 11 2004 - 09:33:04 PST)
- Re: AMBER: Installing AMBER on SGI Octane 2-CPU - erfcfun.c compile prob. (Tue Feb 10 2004 - 15:54:45 PST)
- Re: AMBER: minimization output (Tue Feb 10 2004 - 13:05:59 PST)
- Re: AMBER: Temperature in Nmode (Tue Feb 10 2004 - 08:42:06 PST)
- Re: AMBER: Nmode convergence (Tue Feb 10 2004 - 08:34:17 PST)
- Re: AMBER: antechamber + FAILED TO ACHIEVE SCF (Mon Feb 09 2004 - 14:17:49 PST)
- Re: AMBER: antechamber error (Mon Feb 09 2004 - 08:22:07 PST)
- Re: AMBER: antechamber + mopac + MAXIMUM NUMBER OF ATOMIC ORBITALS EXCEEDED (Sat Feb 07 2004 - 08:33:48 PST)
- Re: Fwd: Re: AMBER: Lattice structures in xleap (Fri Feb 06 2004 - 13:54:07 PST)
- Re: AMBER: ptraj and dipoles (Thu Feb 05 2004 - 23:11:50 PST)
- Re: AMBER: MCSS (Thu Feb 05 2004 - 23:12:47 PST)
- Re: AMBER: PMEMD and nmropt=1 (Thu Feb 05 2004 - 17:29:41 PST)
- Re: AMBER: antechamber error in test / differences in prmtop files (Thu Feb 05 2004 - 13:11:53 PST)
- Re: AMBER: cell dimensions (Thu Feb 05 2004 - 10:00:41 PST)
- Re: AMBER: TI, angle parameters for nitrogen, frcmod (Thu Feb 05 2004 - 09:51:39 PST)
- Re: AMBER: xleap & antechamber (Thu Feb 05 2004 - 09:46:02 PST)
- Re: AMBER: Re: ANAL problem (Thu Feb 05 2004 - 09:36:05 PST)
- Re: AMBER: antechamber + mopac error (Thu Feb 05 2004 - 09:21:11 PST)
- Re: AMBER: NMODE for protein via MM-PBSA-cntd (Wed Feb 04 2004 - 08:32:37 PST)
- Re: AMBER: leap - orientation of sequenced residues (Tue Feb 03 2004 - 09:44:50 PST)
- Re: AMBER: What does this error message mean? (Tue Feb 03 2004 - 08:12:48 PST)
- Re: AMBER: ANAL problem. (Mon Feb 02 2004 - 10:51:02 PST)
- Re: AMBER: LEaP- Error reading frcmod parameters. (Mon Feb 02 2004 - 10:20:43 PST)
- Re: AMBER: DNA (Mon Feb 02 2004 - 08:58:26 PST)
David Smith
- Re: AMBER: pmf calculation using gibbs (Thu Feb 26 2004 - 00:57:02 PST)
Do Anh Tuan
- AMBER: How to remove Cl- ions (Fri Feb 06 2004 - 05:24:10 PST)
- AMBER: How to remove Cl- ions (Fri Feb 06 2004 - 02:38:41 PST)
donna j
- AMBER: problem with tleap in Amber (Sun Feb 15 2004 - 18:44:25 PST)
- Re: AMBER: problem with frcmod file (Sun Feb 29 2004 - 11:43:24 PST)
- Re: AMBER: problem with frcmod file (Thu Feb 26 2004 - 10:23:25 PST)
- AMBER: problem with frcmod file (Mon Feb 23 2004 - 13:47:12 PST)
- AMBER: problem with tleap in Amber (Sun Feb 15 2004 - 19:01:27 PST)
Dr. Yong Duan
- Re: AMBER: Box of mixed solvant (Tue Feb 10 2004 - 22:09:28 PST)
- Re: AMBER: adding ions to nucleic acids (Tue Feb 10 2004 - 21:54:58 PST)
- Re: AMBER: convert restart to mdcrd? (Mon Feb 02 2004 - 09:27:41 PST)
- Re: AMBER: convert restart to mdcrd? (Mon Feb 02 2004 - 08:48:55 PST)
Emmanuel Giudice
- AMBER: size.h error (Thu Feb 26 2004 - 13:15:20 PST)
Fang, Jianwen
- AMBER: how to use prep file (Mon Feb 23 2004 - 11:15:19 PST)
- RE: AMBER: antechamber error (Mon Feb 09 2004 - 10:00:28 PST)
Florian Barth
- Re: AMBER: pka calculation (Sat Feb 28 2004 - 07:46:04 PST)
FyD
- Re: AMBER: R.E.D. (Tue Feb 24 2004 - 08:16:57 PST)
- Re: AMBER: R.E.D. (Mon Feb 23 2004 - 17:42:13 PST)
- Re: AMBER: contributed parameters (Fri Feb 20 2004 - 16:05:48 PST)
- Re: AMBER: contributed parameters (Fri Feb 20 2004 - 09:08:34 PST)
- Re: AMBER: compiling software(RESP) on MAC G5 (Thu Feb 19 2004 - 08:27:54 PST)
- Re: AMBER: contributed parameters (Wed Feb 18 2004 - 09:12:04 PST)
- AMBER: Box of mixed solvant (Tue Feb 10 2004 - 20:18:42 PST)
Gabbar Daaku
- AMBER: Can anybody help me with CHARMM (Sun Feb 22 2004 - 19:13:09 PST)
Giulio Rastelli
- AMBER: LCPO parameters in gbsa (Thu Feb 19 2004 - 08:53:56 PST)
- AMBER: water as a "ligand" in GBSA and MM-PBSA? (Fri Feb 06 2004 - 09:41:50 PST)
Herbert Georg
- AMBER: flexible water potential (Tue Feb 17 2004 - 03:22:12 PST)
- AMBER: center of mass in CARNAL (Thu Feb 12 2004 - 08:15:17 PST)
- AMBER: dipole moment in ptraj (Sun Feb 08 2004 - 10:42:07 PST)
- AMBER: ptraj and dipoles.... (Fri Feb 06 2004 - 13:12:10 PST)
- Re: AMBER: ptraj and dipoles (Fri Feb 06 2004 - 03:47:12 PST)
- AMBER: ptraj and dipoles (Thu Feb 05 2004 - 13:40:24 PST)
- AMBER: carnal (Wed Feb 04 2004 - 11:18:37 PST)
- Re: AMBER: Carnal (Tue Feb 03 2004 - 11:30:33 PST)
- AMBER: Carnal (Tue Feb 03 2004 - 08:11:28 PST)
hj zou
- AMBER: pka calculation (Fri Feb 27 2004 - 18:42:34 PST)
- AMBER: mmpbsa qustion (Wed Feb 25 2004 - 17:23:37 PST)
- AMBER: pka calculation (Mon Feb 23 2004 - 05:33:00 PST)
- AMBER: mm_pbsa question (Wed Feb 18 2004 - 19:22:00 PST)
- AMBER: tmd question (Wed Feb 18 2004 - 18:58:45 PST)
Holger Gohlke
- Re: AMBER: PB in mm-pbsa (Sun Feb 29 2004 - 06:02:29 PST)
- Re: AMBER: mmpbsa qustion (Wed Feb 25 2004 - 23:29:06 PST)
- Re: AMBER: MM-PBSA:??Decomposition of receptor energies?? (Mon Feb 16 2004 - 23:24:25 PST)
- Re: AMBER: MM-PBSA:??Decomposition of receptor energies?? (Mon Feb 16 2004 - 02:09:07 PST)
Ioana Cozmuta
- AMBER: how to add force field parameters (Thu Feb 19 2004 - 12:27:02 PST)
Itziar Maestre Asenjo
- Re: AMBER: How to remove Cl- ions (Fri Feb 06 2004 - 02:58:05 PST)
James W. Caldwell
- Re: AMBER: problem with frcmod file (Thu Feb 26 2004 - 10:45:44 PST)
- Re: AMBER: mmpbsa qustion (Thu Feb 26 2004 - 10:06:13 PST)
- Re: AMBER: compiling software(RESP) on MAC G5 (Thu Feb 19 2004 - 10:50:28 PST)
- AMBER: off-subject ROCKS/Qbank (Fri Feb 06 2004 - 12:03:09 PST)
Javier Perez Miron
- AMBER: Problems with xleap (Thu Feb 26 2004 - 17:18:11 PST)
Joey Harriman
- AMBER: MD simulations with 2 molecules (Wed Feb 18 2004 - 12:32:47 PST)
John
- RE: AMBER: NMR restraints-Floating point exception (Wed Feb 25 2004 - 10:19:25 PST)
- AMBER: NMR restraints-Floating point exception (Wed Feb 25 2004 - 06:44:52 PST)
- AMBER: distance-aromatic ring (Thu Feb 19 2004 - 03:03:56 PST)
- AMBER: (Tue Feb 17 2004 - 02:05:22 PST)
- AMBER: bad crd file (Mon Feb 16 2004 - 07:30:26 PST)
- AMBER: SIGSEGV (Mon Feb 16 2004 - 02:43:36 PST)
John Bushnell
- Re: AMBER: Star like (branching) molecule (Tue Feb 24 2004 - 15:33:45 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 15:39:46 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 14:19:48 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 12:44:44 PST)
Joseph E. Maxwell
- AMBER: Installing AMBER on SGI Octane 2-CPU - erfcfun.c compile prob. (Tue Feb 10 2004 - 15:36:26 PST)
Julien Pecher
- AMBER: carnal (Mon Feb 16 2004 - 05:17:33 PST)
- AMBER: ptraj (Thu Feb 05 2004 - 00:46:09 PST)
Junmei Wang
- Re: AMBER: antechamber + FAILED TO ACHIEVE SCF (Mon Feb 09 2004 - 11:27:02 PST)
jwfang
- AMBER: antechamber error (Mon Feb 09 2004 - 07:50:17 PST)
Karin Schleinkofer
- AMBER: ptraj (Thu Feb 12 2004 - 02:57:47 PST)
- AMBER: convert restart to mdcrd? (Mon Feb 02 2004 - 06:39:40 PST)
Kristina Furse
- RE: AMBER: how to use prep file (Mon Feb 23 2004 - 12:14:20 PST)
- RE: AMBER: PMEMD and nmropt=1 (Thu Feb 05 2004 - 13:19:52 PST)
L Jin
- RE: AMBER: add Na+ (Wed Feb 25 2004 - 02:33:02 PST)
- RE: AMBER: add Na+ (Tue Feb 24 2004 - 11:29:36 PST)
- AMBER: add Na+ (Tue Feb 24 2004 - 10:23:55 PST)
- Re: AMBER: minimization output (Fri Feb 20 2004 - 02:36:35 PST)
- RE: AMBER: Close contact warnings (Thu Feb 19 2004 - 07:11:54 PST)
- Re: AMBER: Close contact warnings (Wed Feb 18 2004 - 10:56:49 PST)
- Re: AMBER: Close contact warnings (Wed Feb 18 2004 - 08:55:55 PST)
- Re: AMBER: Close contact warnings (Wed Feb 18 2004 - 02:14:55 PST)
- Re: AMBER: Close contact warnings (Tue Feb 17 2004 - 10:14:37 PST)
- AMBER: Close contact warnings (Tue Feb 17 2004 - 06:29:57 PST)
- AMBER: DIELC (Mon Feb 16 2004 - 05:51:35 PST)
- Re: AMBER: minimization output (Fri Feb 13 2004 - 01:49:52 PST)
- AMBER: minimization output (Tue Feb 10 2004 - 08:36:25 PST)
- AMBER: xleap & antechamber (Tue Feb 03 2004 - 01:46:54 PST)
Lifeng Tian.PantherServer
- Re: AMBER: compiling software(RESP) on MAC G5 (Thu Feb 19 2004 - 12:41:05 PST)
Lishan Yao
- AMBER: image in ptraj (Mon Feb 16 2004 - 08:11:25 PST)
- Re: AMBER: TER in amber (Thu Feb 12 2004 - 09:12:45 PST)
- Re: AMBER: TER in amber (Thu Feb 12 2004 - 10:08:29 PST)
- Re: AMBER: TER in amber (Thu Feb 12 2004 - 08:17:02 PST)
- AMBER: TER in amber (Thu Feb 12 2004 - 07:04:03 PST)
- Re: AMBER: LES question (Thu Feb 12 2004 - 05:59:02 PST)
- Re: AMBER: LES question (Wed Feb 11 2004 - 11:52:09 PST)
- Re: AMBER: LES question (Wed Feb 11 2004 - 11:20:54 PST)
- Re: AMBER: LES question (Wed Feb 11 2004 - 06:16:01 PST)
- Re: AMBER: LES question (Tue Feb 10 2004 - 13:02:18 PST)
- AMBER: LES question (Tue Feb 10 2004 - 12:47:20 PST)
Martina Roeselova
- AMBER: rstdip (Wed Feb 04 2004 - 09:57:18 PST)
- Re: AMBER: What does this error message mean? (Tue Feb 03 2004 - 11:55:22 PST)
- Re: AMBER: NVE&polarizable force field (Mon Feb 02 2004 - 09:33:17 PST)
Małgorzata Jarończyk
- AMBER: Can you write me how can I add the ACE and NMe groups in the Xleap? (Tue Feb 24 2004 - 06:59:46 PST)
- AMBER: How to add ACE and NME groups? (Mon Feb 23 2004 - 01:47:00 PST)
- AMBER: Re: To David Case (Fri Feb 13 2004 - 03:25:52 PST)
- Re: AMBER: Run calculations for protein in Amber-distance dependent dielectric function (Thu Feb 12 2004 - 06:28:59 PST)
- AMBER: Run calculations for protein in Amber (Thu Feb 12 2004 - 01:18:20 PST)
MD Tyka, Biochemistry
- AMBER: Thermostat comparison ? (Mon Feb 23 2004 - 09:41:56 PST)
Meg McCarrick
- RE: AMBER: antechamber + mopac error (Thu Feb 05 2004 - 09:12:42 PST)
Michael Crowley
- Re: AMBER: sander + ewald bomb (Wed Feb 18 2004 - 13:13:42 PST)
Michael George Lerner
- Re: AMBER: Close contact warnings (Wed Feb 18 2004 - 05:58:50 PST)
Michael Trieb
- Re: AMBER: ptraj & LES (Mon Feb 02 2004 - 09:11:08 PST)
Miguel de Federico
- AMBER: LEaP- Error reading frcmod parameters. (Mon Feb 02 2004 - 10:03:00 PST)
Mingfeng Yang
- AMBER: Amber on Redhat Enterprise (Tue Feb 03 2004 - 10:23:44 PST)
ML
- Re: AMBER: MM-PBSA:??Decomposition of receptor energies?? (Mon Feb 16 2004 - 07:59:04 PST)
- AMBER: MM-PBSA:??Decomposition of receptor energies?? (Mon Feb 16 2004 - 01:18:17 PST)
- Re: AMBER: MM-PBSA: molecular charges and active site water (Thu Feb 12 2004 - 23:30:23 PST)
- Re: AMBER: Nmode convergence (Wed Feb 11 2004 - 00:14:31 PST)
- Re: AMBER: Temperature in Nmode (Tue Feb 10 2004 - 12:46:19 PST)
- AMBER: Temperature in Nmode (Tue Feb 10 2004 - 07:25:12 PST)
- Re: AMBER: Nmode convergence (Tue Feb 10 2004 - 07:26:12 PST)
- AMBER: Nmode convergence (Mon Feb 09 2004 - 23:36:27 PST)
- Re: AMBER: NMODE for protein via MM-PBSA-cntd (Wed Feb 04 2004 - 09:18:12 PST)
- AMBER: NMODE for protein via MM-PBSA-cntd (Wed Feb 04 2004 - 08:09:57 PST)
Myunggi Yi
- AMBER: pmf calculation using gibbs (Wed Feb 25 2004 - 08:47:25 PST)
- Re: AMBER: pmf calculation using gibbs. (Thu Feb 19 2004 - 07:13:30 PST)
- AMBER: pmf calculation using gibbs. (Wed Feb 18 2004 - 21:22:46 PST)
nie beining
- AMBER: What does this error message mean? (Tue Feb 03 2004 - 07:58:41 PST)
Nikolai Smolin
- AMBER: TIP4P extended (Mon Feb 16 2004 - 09:10:19 PST)
- AMBER: TIP4P extended (Mon Feb 16 2004 - 09:06:30 PST)
- AMBER: TIP4P (Mon Feb 16 2004 - 02:58:56 PST)
- AMBER: protonation (Tue Feb 03 2004 - 01:50:23 PST)
Obdulia Rabal
- AMBER: IFC COMPILER (Mon Feb 16 2004 - 04:54:00 PST)
opitz.che.udel.edu
- AMBER: Star like (branching) molecule (Tue Feb 24 2004 - 14:54:45 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 13:47:51 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 13:35:44 PST)
- Re: AMBER: Defining residues (Mon Feb 23 2004 - 11:02:58 PST)
- AMBER: Defining residues (Sat Feb 21 2004 - 20:34:56 PST)
- AMBER: saveamberparm warning in leap? (Mon Feb 16 2004 - 13:24:45 PST)
Peter Oelschlaeger
- Re: AMBER: histidine and its various forms (Wed Feb 18 2004 - 10:10:49 PST)
Petr Jeřábek
- Re: AMBER: LES (Thu Feb 19 2004 - 14:10:00 PST)
- Re: AMBER: LES (Thu Feb 19 2004 - 13:08:38 PST)
- AMBER: LES (Thu Feb 19 2004 - 10:10:50 PST)
Piotr Cieplak
- Re: AMBER: Can anybody help me with CHARMM (Sun Feb 22 2004 - 19:49:21 PST)
Qing Zhang
- RE: AMBER: temperature in DelPhi for MM-PBSA calculation (Mon Feb 02 2004 - 16:58:54 PST)
- AMBER: temperature in DelPhi for MM-PBSA calculation (Mon Feb 02 2004 - 14:54:05 PST)
Rhonda Torres
- Re: AMBER: xleap don't recognize my residue/atom (Sun Feb 22 2004 - 14:23:59 PST)
rluo.uci.edu
- Re: AMBER: temperature in DelPhi for MM-PBSA calculation (Mon Feb 02 2004 - 18:45:52 PST)
Robert Duke
- Re: AMBER: IFC COMPILER (Mon Feb 16 2004 - 05:18:03 PST)
- AMBER: Aldo's PMEMD bug (Mon Feb 09 2004 - 05:53:43 PST)
- Re: AMBER: PMEMD and nmropt=1 (Thu Feb 05 2004 - 13:45:07 PST)
- Re: AMBER: PMEMD and nmropt=1 (Thu Feb 05 2004 - 04:39:58 PST)
Ross Walker
- RE: AMBER: add Na+ (Tue Feb 24 2004 - 10:42:28 PST)
S. Frank Yan
- re: AMBER: check unit + saveamberparm (Fri Feb 20 2004 - 16:17:41 PST)
- RE: AMBER: contributed parameters (modified base - PSU) (Tue Feb 17 2004 - 18:32:56 PST)
- AMBER: moil-view question (Mon Feb 16 2004 - 18:43:57 PST)
- RE: AMBER: temperature in DelPhi for MM-PBSA calculation (Mon Feb 02 2004 - 15:18:22 PST)
Sarah Wittkopp
- Re: AMBER: TIP4P extended (Mon Feb 16 2004 - 09:21:15 PST)
- AMBER: leap - orientation of sequenced residues (Mon Feb 02 2004 - 17:58:33 PST)
scopio
- AMBER: xleap don't recognize my residue/atom (Sun Feb 22 2004 - 03:18:42 PST)
Scott Brozell
- Re: AMBER: compiling software(RESP) on MAC G5 (Wed Feb 18 2004 - 21:36:06 PST)
- AMBER: GLYCAM web site (Wed Feb 18 2004 - 12:00:39 PST)
- Re: AMBER: rstdip (Wed Feb 04 2004 - 10:19:45 PST)
Sergio E. Wong
- AMBER: GBSA frequency update (Wed Feb 11 2004 - 15:29:10 PST)
Shau Grossman
- Re: AMBER: R.E.D. (Mon Feb 23 2004 - 18:13:43 PST)
- AMBER: R.E.D. (Mon Feb 23 2004 - 17:20:44 PST)
- Re: AMBER: contributed parameters (Fri Feb 20 2004 - 13:46:04 PST)
- Re: AMBER: contributed parameters (Thu Feb 19 2004 - 18:55:46 PST)
- AMBER: contributed parameters (modified base - PSU) (Tue Feb 17 2004 - 18:14:16 PST)
Sichun Yang
- AMBER: neutrality of charge in AMBER 7 (Thu Feb 12 2004 - 12:51:51 PST)
Stern, Julie
- AMBER: histidine and its various forms (Wed Feb 18 2004 - 06:38:31 PST)
Sue Heavner
- AMBER: PB in mm-pbsa (Sat Feb 28 2004 - 08:30:05 PST)
Surjit Dixit
- Re: AMBER: size.h error (Thu Feb 26 2004 - 13:53:20 PST)
susan.costantini.unina2.it
- AMBER: minimizating complex-protein with AMBER (Sun Feb 15 2004 - 01:27:00 PST)
Teletchéa Stéphane
- Re: AMBER: moil-view question (Tue Feb 17 2004 - 05:49:31 PST)
- Re: AMBER: convert restart to mdcrd? (Mon Feb 02 2004 - 08:17:30 PST)
Terry Downing
- AMBER: Nitrogen vdw type (Tue Feb 10 2004 - 14:56:37 PST)
Thomas E. Cheatham, III
- Re: AMBER: ptraj (Thu Feb 12 2004 - 10:03:36 PST)
- Re: AMBER: dipole moment in ptraj (Sun Feb 08 2004 - 15:00:55 PST)
- Re: AMBER: question about the average structure from ptraj (Sun Feb 08 2004 - 11:49:23 PST)
ThuZar Lwin
- Re: AMBER: (no subject) (Tue Feb 17 2004 - 13:33:30 PST)
- AMBER: (no subject) (Tue Feb 17 2004 - 12:52:40 PST)
Tom Turner
- AMBER: RESP charges for protein fragment (Tue Feb 17 2004 - 08:20:15 PST)
Tru Huynh
- Re: AMBER: Can anybody help me with CHARMM (Wed Feb 25 2004 - 05:36:18 PST)
uddhavesh bhaskar sonavane
- AMBER: protein - fractional native contacts (Mon Feb 23 2004 - 03:50:06 PST)
Viktor Hornak
- Re: AMBER: LES (Thu Feb 19 2004 - 13:30:32 PST)
- Re: AMBER: sander and mpich (which compilers/mpich work) (Wed Feb 04 2004 - 11:13:13 PST)
Vlad Cojocaru
- AMBER: LES methodology question (Fri Feb 20 2004 - 04:12:14 PST)
- Re: AMBER: TER in amber (Fri Feb 13 2004 - 00:35:41 PST)
- Re: AMBER: TER in amber (Thu Feb 12 2004 - 07:56:04 PST)
- Re: AMBER: Run calculations for protein in Amber-distance dependent dielectric function (Thu Feb 12 2004 - 06:34:31 PST)
- Re: AMBER: ptraj (Thu Feb 12 2004 - 03:45:55 PST)
- Re: AMBER: LES question (Tue Feb 10 2004 - 13:01:12 PST)
- Re: AMBER: adding ions to nucleic acids (Sun Feb 08 2004 - 04:25:55 PST)
- Re: AMBER: How to remove Cl- ions (Fri Feb 06 2004 - 03:09:52 PST)
- Re: AMBER: the uses for Amber FFs (Tue Feb 03 2004 - 06:56:26 PST)
- AMBER: nucleic acid bases nonplanar during LES sim (Mon Feb 02 2004 - 13:17:09 PST)
- Re: AMBER: ptraj & LES (Mon Feb 02 2004 - 09:22:09 PST)
- AMBER: ptraj & LES (Mon Feb 02 2004 - 08:46:08 PST)
- Re: AMBER: convert restart to mdcrd? (Mon Feb 02 2004 - 08:07:49 PST)
- Re: AMBER: convert restart to mdcrd? (Mon Feb 02 2004 - 08:07:12 PST)
- Re: AMBER: convert restart to mdcrd? (Mon Feb 02 2004 - 07:33:35 PST)
Wayne Dawson
- AMBER: How to remove Cl- ions (Fri Feb 06 2004 - 03:19:33 PST)
- Re: AMBER: questions parm94/99 ff secondary structure (Thu Feb 05 2004 - 23:50:07 PST)
- AMBER: Installing Amber on IBM AIX cluster (Mon Feb 02 2004 - 22:11:49 PST)
Wen Li
- AMBER: ions94.lib file (Fri Feb 20 2004 - 09:10:06 PST)
- AMBER: prep files for modified bases (Thu Feb 19 2004 - 08:58:01 PST)
xiaolin cheng
- Re: AMBER: LES question (Tue Feb 10 2004 - 16:14:31 PST)
Xin Chen
- AMBER: Build a H+ ion in Leap? (Thu Feb 19 2004 - 11:40:40 PST)
- Re: AMBER: Segmentation fault in SaveAmberParm (Wed Feb 18 2004 - 11:12:53 PST)
xinchen
- Re: AMBER: Build a H+ ion in Leap? (Thu Feb 19 2004 - 12:19:20 PST)
- AMBER: Segmentation fault in SaveAmberParm (Tue Feb 17 2004 - 19:31:35 PST)
- Re: AMBER: How to add H+ ion in leap? (Tue Feb 17 2004 - 12:43:18 PST)
- AMBER: How to add H+ ion in leap? (Tue Feb 17 2004 - 11:46:10 PST)
Yong Duan
- RE: AMBER: Close contact warnings (Wed Feb 18 2004 - 11:07:36 PST)
Youyi Peng
- AMBER: averaged structure with unknown elements (Wed Feb 25 2004 - 13:32:54 PST)
- AMBER: carnal (Tue Feb 24 2004 - 08:36:11 PST)

Amber Archive Feb 2004 by author