dear amber users，
Now I wanna perform a tmd simulation using amber.But I'm not sure whether it can work or not.
I have two proteins,protein A and protein B, which form complex.The initial structure is protein A with a ligand C complexed with unbound protein B.The target structure is protein B with the ligand C complexed with unbound protein A.
Can anyone tell me whether TMD can experience such a conformational change and provide insight into the process of conformational change?If not ,is there any other method to tackle this problem?
Any suggestions are appreciated.
best regards
2004-02-19
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Received on Thu Feb 19 2004 - 03:53:00 PST
