Re: AMBER: DNA

From: David A. Case <case.scripps.edu>
Date: Mon, 2 Feb 2004 08:58:26 -0800

On Mon, Feb 02, 2004, Beale, John wrote:

> At the bottom of the md.in file for the production run of the polyA-polyT
> molecule in the DNA tutorial there is a set of numbers. I wonder if someone
> could tell me what they mean:
>
> 58.3501205 39.8315298 39.8315298 90.0000000 90.0000000 90.0000000
> 60 40 40 4 0 0 0
> 0.00001
>

This is ancient stuff related to version 6 (or earlier!) of amber. The
numbers of the fft dimensions, an error tolerance, etc. But you should just
ignore this part: these values are nowadays set by default, and the cards
above are ignored.

...dac 

-- 
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David A. Case                     |  e-mail:      case.scripps.edu
Dept. of Molecular Biology, TPC15 |  fax:          +1-858-784-8896
The Scripps Research Institute    |  phone:        +1-858-784-9768
10550 N. Torrey Pines Rd.         |  home page:                   
La Jolla CA 92037  USA            |    http://www.scripps.edu/case
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Received on Mon Feb 02 2004 - 17:53:00 PST
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