At the bottom of the md.in file for the production run of the polyA-polyT molecule in the DNA tutorial there is a set of numbers. I wonder if someone could tell me what they mean:
58.3501205 39.8315298 39.8315298 90.0000000 90.0000000 90.0000000
60 40 40 4 0 0 0
0.00001
I recognize that the first string of numbers is the box size for the run. What do the "60 40 40 4 0 0 0" and "0.00001" indicate? Is sander actually reading the box size from this file and using these values in the run? I couldn't find reference to this in the manual.
Thanks!
John Beale
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Mon Feb 02 2004 - 14:53:00 PST
