Hey Everyone,
In my research involving RNA, I have noticed that for both Amber and
OPLS, there appears to only be one VDW radius and well depth for
nitrogen regardless of chemical environment. For example, both amino
nitrogens and aromatic nitrogens have the same radius and well depth.
Is this true or am I missing something? If I am correct, what were the
original experiments that supported this decision? Has there been any
follow-up work in this area? Any information about this would be
appreciated. Thanks in advance for you help.
Sincerely,
Terry Downing
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Tue Feb 10 2004 - 23:53:00 PST
