Did you use the same prmtop for the RMS run?
> I used carnal to concatenate several mdcrd trajectory file into one file
> and then read the file into carnal to do RMS fit. I got the error
> message " too many numbers on box line for mdcrd format - bad coord
> file or carnal bug" . The carnal input file to combine the trajectory
> file is as followed. Anything wrong? By the way my system is
> water-solvated. Thanks.
>
> Youyi
>
> carnal input file:
>
> FILES_IN
> PARM p1 pfmrk_sol.prmtop.gz;
> STREAM s1 3.crd.gz 4.crd.gz 5.crd.gz 6.crd.gz 7.crd.gz 8.crd.gz
> 9.crd.gz;
> FILES_OUT
> COORD c1 MDtraj_pt.crd CRD;
> DECLARE
>
> OUTPUT
> COORD c1 s1;
> END
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Received on Tue Feb 24 2004 - 17:53:00 PST
