Amber Archive Nov 2019 by thread
240 messages
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Starting
Fri Nov 01 2019 - 10:30:02 PDT,
Ending
Sat Nov 30 2019 - 09:00:01 PST
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Re: [AMBER] Calculate MMGBSA keeping water in binding site
Rosellen, Martin
(Fri Nov 01 2019 - 10:24:54 PDT)
[AMBER] reinstallation of amber 14
Sruthi Sudhakar
(Fri Nov 01 2019 - 22:41:49 PDT)
[AMBER] Parameter file not saved
student_cbc_1 nnlab
(Sun Nov 03 2019 - 03:11:19 PST)
Re: [AMBER] Parameter file not saved
Bill Ross
(Sun Nov 03 2019 - 03:47:49 PST)
Re: [AMBER] Parameter file not saved
Carlos Simmerling
(Sun Nov 03 2019 - 04:47:19 PST)
Re: [AMBER] Parameter file not saved
David Case
(Sun Nov 03 2019 - 04:54:31 PST)
[AMBER] Problem with ABMD simulation
Federico Iacovelli
(Sun Nov 03 2019 - 06:47:39 PST)
Re: [AMBER] Problem with ABMD simulation
Feng Pan
(Sun Nov 03 2019 - 11:39:16 PST)
[AMBER] cpptraj.MPI query
Debarati DasGupta
(Sun Nov 03 2019 - 09:39:14 PST)
Re: [AMBER] cpptraj.MPI query
Daniel Roe
(Sun Nov 03 2019 - 17:00:50 PST)
Re: [AMBER] cpptraj.MPI query
Debarati DasGupta
(Mon Nov 04 2019 - 06:01:28 PST)
Re: [AMBER] cpptraj.MPI query
Daniel Roe
(Mon Nov 04 2019 - 07:20:00 PST)
Re: [AMBER] cpptraj.MPI query
Debarati DasGupta
(Mon Nov 04 2019 - 07:34:59 PST)
Re: [AMBER] cpptraj.MPI query
Daniel Roe
(Mon Nov 04 2019 - 11:17:11 PST)
Re: [AMBER] cpptraj.MPI query
Debarati DasGupta
(Mon Nov 04 2019 - 11:41:05 PST)
Re: [AMBER] cpptraj.MPI query
Daniel Roe
(Mon Nov 04 2019 - 11:54:10 PST)
Re: [AMBER] cpptraj.MPI query
Debarati DasGupta
(Mon Nov 04 2019 - 12:07:53 PST)
Re: [AMBER] cpptraj.MPI query
Daniel Roe
(Mon Nov 04 2019 - 12:28:49 PST)
Re: [AMBER] cpptraj.MPI query
Debarati DasGupta
(Mon Nov 04 2019 - 12:38:13 PST)
Re: [AMBER] cpptraj.MPI query
Debarati DasGupta
(Mon Nov 04 2019 - 12:50:11 PST)
[AMBER] velocity autocorrelation
Ajeet Kumar Yadav
(Sun Nov 03 2019 - 10:00:28 PST)
Re: [AMBER] velocity autocorrelation
Daniel Roe
(Mon Nov 04 2019 - 11:27:17 PST)
Re: [AMBER] Problem in Leap PDB Reading
Robert Molt
(Sun Nov 03 2019 - 14:25:08 PST)
Re: [AMBER] Problem in Leap PDB Reading
Yong Duan
(Sun Nov 03 2019 - 15:07:38 PST)
Re: [AMBER] Problem in Leap PDB Reading
Robert Molt
(Sun Nov 03 2019 - 16:31:04 PST)
Re: [AMBER] Problem in Leap PDB Reading
Yong Duan
(Tue Nov 05 2019 - 21:48:40 PST)
[AMBER] Parameter file GTP or GMP containing tRNA
student_cbc_1 nnlab
(Mon Nov 04 2019 - 02:27:35 PST)
Re: [AMBER] Parameter file GTP or GMP containing tRNA
David A Case
(Mon Nov 04 2019 - 04:36:17 PST)
[AMBER] Open Scientific Computing Roles at GSK.
Ross Walker
(Mon Nov 04 2019 - 12:48:59 PST)
[AMBER] problem with MM/PB(GB)SA (Geng Dong)
东庚
(Tue Nov 05 2019 - 00:21:53 PST)
Re: [AMBER] problem with MM/PB(GB)SA (Geng Dong)
Ray Luo
(Wed Nov 06 2019 - 09:28:37 PST)
[AMBER] md simulation with GPU （Geng Dong）
东庚
(Tue Nov 05 2019 - 00:44:27 PST)
Re: [AMBER] md simulation with GPU （Geng Dong）
Gerardo Zerbetto De Palma
(Tue Nov 05 2019 - 05:18:57 PST)
[AMBER] Large GPU performance difference for umbrella sampling methods: (infe=1 and &pmd) vs (nmropt=1 and disang-rst)
Åsmund Røhr Kjendseth
(Tue Nov 05 2019 - 01:13:23 PST)
Re: [AMBER] Large GPU performance difference for umbrella sampling methods: (infe=1 and &pmd) vs (nmropt=1 and disang-rst)
accuratefreeenergy.gmail.com
(Tue Nov 05 2019 - 04:55:49 PST)
[AMBER] error in namelist
Debarati DasGupta
(Tue Nov 05 2019 - 06:29:22 PST)
Re: [AMBER] error in namelist
David A Case
(Tue Nov 05 2019 - 09:47:52 PST)
[AMBER] mmbpsa.py error
Alen Ahmetovic
(Tue Nov 05 2019 - 16:25:26 PST)
Re: [AMBER] mmbpsa.py error
David Case
(Tue Nov 05 2019 - 17:45:29 PST)
[AMBER] md simulation with GPU -Geng Dong
东庚
(Tue Nov 05 2019 - 18:03:07 PST)
Re: [AMBER] md simulation with GPU -Geng Dong
Ross Walker
(Tue Nov 05 2019 - 18:09:35 PST)
[AMBER] mac os catalina..... (oh my god)
Fabian Glaser
(Wed Nov 06 2019 - 00:07:55 PST)
Re: [AMBER] mac os catalina..... (oh my god)
Gustaf Olsson
(Wed Nov 06 2019 - 00:40:52 PST)
Re: [AMBER] mac os catalina..... (oh my god)
Fabian Glaser
(Wed Nov 06 2019 - 00:58:05 PST)
[AMBER] jump in monomer position
Fabian Glaser
(Wed Nov 06 2019 - 00:55:55 PST)
Re: [AMBER] jump in monomer position
Carlos Simmerling
(Wed Nov 06 2019 - 13:02:50 PST)
Re: [AMBER] jump in monomer position
Fabian Glaser
(Wed Nov 06 2019 - 23:26:23 PST)
Re: [AMBER] Minimization of ethanol in water
David Case
(Wed Nov 06 2019 - 14:25:17 PST)
Re: [AMBER] compiling Amber with gcc 9.2 and intel mpi 2019
Vlad Cojocaru
(Thu Nov 07 2019 - 06:47:09 PST)
Re: [AMBER] compiling Amber with gcc 9.2 and intel mpi 2019
David A Case
(Thu Nov 07 2019 - 11:50:49 PST)
Re: [AMBER] compiling Amber with gcc 9.2 and intel mpi 2019
Vlad Cojocaru
(Thu Nov 07 2019 - 11:56:57 PST)
Re: [AMBER] steered md at constant force
Wesley Michael Botello-Smith
(Thu Nov 07 2019 - 16:15:58 PST)
[AMBER] tleap error
MYRIAN TORRES RICO
(Fri Nov 08 2019 - 03:31:02 PST)
Re: [AMBER] tleap error
Akinpelu Olayinka
(Fri Nov 08 2019 - 03:50:09 PST)
Re: [AMBER] tleap error
David A Case
(Fri Nov 08 2019 - 05:25:11 PST)
[AMBER] tleap error
MYRIAN TORRES RICO
(Fri Nov 08 2019 - 03:31:45 PST)
Re: [AMBER] tleap error
Bill Ross
(Fri Nov 08 2019 - 04:14:30 PST)
[AMBER] tleap error
MYRIAN TORRES RICO
(Fri Nov 08 2019 - 04:11:38 PST)
[AMBER] building openMP cpptraj with intel compiler
Vlad Cojocaru
(Fri Nov 08 2019 - 05:13:14 PST)
Re: [AMBER] building openMP cpptraj with intel compiler
Vlad Cojocaru
(Fri Nov 08 2019 - 05:34:36 PST)
Re: [AMBER] building openMP cpptraj with intel compiler
Daniel Roe
(Tue Nov 12 2019 - 06:49:44 PST)
Re: [AMBER] building openMP cpptraj with intel compiler
Vlad Cojocaru
(Tue Nov 12 2019 - 06:59:38 PST)
Re: [AMBER] building openMP cpptraj with intel compiler
Daniel Roe
(Tue Nov 12 2019 - 07:03:42 PST)
Re: [AMBER] building openMP cpptraj with intel compiler
Vlad Cojocaru
(Tue Nov 12 2019 - 10:13:26 PST)
Re: [AMBER] building openMP cpptraj with intel compiler
Daniel Roe
(Tue Nov 12 2019 - 10:26:10 PST)
[AMBER] Metal ion parameterization using MCPB.py
Abhilash J
(Sat Nov 09 2019 - 10:42:25 PST)
Re: [AMBER] Metal ion parameterization using MCPB.py
Pengfei Li
(Sat Nov 16 2019 - 20:20:08 PST)
Re: [AMBER] How to check the convergence of NEB calculation?
Charles-Alexandre Mattelaer
(Mon Nov 11 2019 - 00:33:05 PST)
Re: [AMBER] How to check the convergence of NEB calculation?
Bill Ross
(Mon Nov 11 2019 - 03:40:58 PST)
Re: [AMBER] How to check the convergence of NEB calculation?
Charles-Alexandre Mattelaer
(Mon Nov 11 2019 - 04:16:37 PST)
[AMBER] How can I calculate dihedral distribution through CPPTRAJ
조준범
(Mon Nov 11 2019 - 03:21:01 PST)
Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ
David A Case
(Mon Nov 11 2019 - 04:50:07 PST)
Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ
조준범
(Mon Nov 11 2019 - 18:23:40 PST)
Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ
Elvis Martis
(Mon Nov 11 2019 - 19:32:48 PST)
Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ
조준범
(Tue Nov 12 2019 - 00:16:39 PST)
Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ
Elvis Martis
(Tue Nov 12 2019 - 02:00:53 PST)
Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ
Daniel Roe
(Tue Nov 12 2019 - 08:21:14 PST)
[AMBER] Making ParmEd play nice with OpenEye?
Brian Radak
(Mon Nov 11 2019 - 07:52:58 PST)
[AMBER] how to cluster by cpptraj
石娜
(Mon Nov 11 2019 - 17:12:22 PST)
Re: [AMBER] how to cluster by cpptraj
Daniel Roe
(Tue Nov 12 2019 - 07:58:52 PST)
[AMBER] cpptraj msd of center -of-mass motion
조준범
(Mon Nov 11 2019 - 18:11:02 PST)
Re: [AMBER] cpptraj msd of center -of-mass motion
David A Case
(Tue Nov 12 2019 - 05:43:00 PST)
Re: [AMBER] cpptraj msd of center -of-mass motion
Daniel Roe
(Tue Nov 12 2019 - 08:22:29 PST)
[AMBER] AMBER18/16 12-6-4LJ Sander TI problem
Paulius Kantakevicius
(Tue Nov 12 2019 - 02:58:51 PST)
Re: [AMBER] AMBER18/16 12-6-4LJ Sander TI problem
Pengfei Li
(Fri Nov 15 2019 - 15:32:10 PST)
Re: [AMBER] AMBER18/16 12-6-4LJ Sander TI problem
Paulius Kantakevicius
(Sat Nov 16 2019 - 03:20:35 PST)
Re: [AMBER] AMBER18/16 12-6-4LJ Sander TI problem
Pengfei Li
(Sat Nov 16 2019 - 18:13:15 PST)
Re: [AMBER] strip problem in cpptraj
Daniel Roe
(Tue Nov 12 2019 - 05:52:07 PST)
[AMBER] NMR refined MD
maya nair
(Tue Nov 12 2019 - 09:20:03 PST)
Re: [AMBER] NMR refined MD
Christina Bergonzo
(Tue Nov 12 2019 - 10:18:39 PST)
Re: [AMBER] NMR refined MD
maya nair
(Tue Nov 12 2019 - 23:28:11 PST)
Re: [AMBER] NMR refined MD
David A Case
(Tue Nov 12 2019 - 10:50:37 PST)
Re: [AMBER] NMR refined MD
maya nair
(Tue Nov 12 2019 - 23:31:08 PST)
[AMBER] Using the polarizable FF GolP
Lucas Bandeira
(Tue Nov 12 2019 - 11:42:18 PST)
[AMBER] Modification of gaff
조준범
(Tue Nov 12 2019 - 19:02:10 PST)
Re: [AMBER] Modification of gaff
David A Case
(Wed Nov 13 2019 - 04:42:21 PST)
[AMBER] 2D graphic visualisation
Giulia Paiardi
(Wed Nov 13 2019 - 08:42:54 PST)
[AMBER] question about prmtop file
조준범
(Thu Nov 14 2019 - 01:22:43 PST)
Re: [AMBER] question about prmtop file
David A Case
(Thu Nov 14 2019 - 05:38:23 PST)
[AMBER] Workshop on Free Energy calculations in Muenster March 11-13 2020
Vlad Cojocaru
(Thu Nov 14 2019 - 02:41:29 PST)
[AMBER] Charge neutrality in QM/MM system
James Kress
(Thu Nov 14 2019 - 06:46:21 PST)
[AMBER] Calculation Tetrahedral Order Parameter of Water
Ajeet Kumar Yadav
(Thu Nov 14 2019 - 10:22:44 PST)
[AMBER] different radii sets and GB models
Neha Gandhi
(Thu Nov 14 2019 - 18:21:57 PST)
Re: [AMBER] different radii sets and GB models
Pietro Aronica
(Thu Nov 14 2019 - 18:29:23 PST)
[AMBER] Does amber work with NVIDIA RTX6000?
Shenglong Wang
(Fri Nov 15 2019 - 08:35:56 PST)
Re: [AMBER] Does amber work with NVIDIA RTX6000?
David Cerutti
(Fri Nov 15 2019 - 19:16:01 PST)
Re: [AMBER] Does amber work with NVIDIA RTX6000?
Shenglong Wang
(Fri Nov 15 2019 - 19:33:27 PST)
Re: [AMBER] Does amber work with NVIDIA RTX6000?
David Cerutti
(Sat Nov 16 2019 - 09:05:16 PST)
[AMBER] Broken AmberTools19 cpptraj compilation for GNU, Intel and PGI on a Cray with -crayxt5 flag
Victor Holanda Rusu
(Fri Nov 15 2019 - 08:42:20 PST)
Re: [AMBER] Broken AmberTools19 cpptraj compilation for GNU, Intel and PGI on a Cray with -crayxt5 flag
Daniel Roe
(Fri Nov 15 2019 - 11:50:58 PST)
[AMBER] decompose MMGBSA error
Nisha Amarnath Jonniya
(Fri Nov 15 2019 - 21:58:59 PST)
Re: [AMBER] decompose MMGBSA error
Elvis Martis
(Fri Nov 15 2019 - 22:21:15 PST)
Re: [AMBER] decompose MMGBSA error
Nisha Amarnath Jonniya
(Sat Nov 16 2019 - 18:53:35 PST)
Re: [AMBER] decompose MMGBSA error
Elvis Martis
(Sun Nov 17 2019 - 22:07:41 PST)
Re: [AMBER] decompose MMGBSA error
Nisha Amarnath Jonniya
(Mon Nov 18 2019 - 00:19:05 PST)
Re: [AMBER] decompose MMGBSA error
Elvis Martis
(Mon Nov 18 2019 - 00:45:20 PST)
Re: [AMBER] decompose MMGBSA error
David Case
(Mon Nov 18 2019 - 04:35:12 PST)
Re: [AMBER] decompose MMGBSA error
Nisha Amarnath Jonniya
(Mon Nov 18 2019 - 20:50:34 PST)
Re: [AMBER] decompose MMGBSA error
Nisha Amarnath Jonniya
(Wed Nov 20 2019 - 03:43:21 PST)
Re: [AMBER] decompose MMGBSA error
Elvis Martis
(Wed Nov 20 2019 - 04:38:41 PST)
Re: [AMBER] decompose MMGBSA error
Nisha Amarnath Jonniya
(Wed Nov 20 2019 - 22:46:36 PST)
Re: [AMBER] decompose MMGBSA error
David A Case
(Thu Nov 21 2019 - 05:36:03 PST)
Re: [AMBER] decompose MMGBSA error
Nisha Amarnath Jonniya
(Thu Nov 21 2019 - 20:27:25 PST)
Re: [AMBER] decompose MMGBSA error
Elvis Martis
(Thu Nov 21 2019 - 20:32:48 PST)
Re: [AMBER] decompose MMGBSA error
Nisha Amarnath Jonniya
(Thu Nov 28 2019 - 04:56:40 PST)
Re: [AMBER] decompose MMGBSA error
Elvis Martis
(Thu Nov 28 2019 - 05:12:04 PST)
[AMBER] Problem running production run
Airy Sanjeev
(Sat Nov 16 2019 - 00:48:04 PST)
Re: [AMBER] Problem running production run
Bill Ross
(Sat Nov 16 2019 - 00:54:11 PST)
Re: [AMBER] Problem running production run
Bill Ross
(Sat Nov 16 2019 - 01:33:23 PST)
[AMBER] There is an bug in how Amber preserves charge neutrality in QM/MM system when ORCA is the targeted QM tool.
James Kress
(Sat Nov 16 2019 - 08:08:40 PST)
[AMBER] Error in PMEMD installation with MPI
Rahul Verma
(Sun Nov 17 2019 - 21:01:52 PST)
Re: [AMBER] Error in PMEMD installation with MPI
David Case
(Mon Nov 18 2019 - 04:22:38 PST)
[AMBER] Simulation run issue
Sayan Poddar
(Sun Nov 17 2019 - 22:03:03 PST)
Re: [AMBER] Simulation run issue
David Case
(Mon Nov 18 2019 - 04:27:52 PST)
[AMBER] Error in themodynamic integration with PMEMD.CUDA
HOCHEOL LIM
(Mon Nov 18 2019 - 04:37:49 PST)
[AMBER] MD CYT C : heme bound
emanuele falbo
(Mon Nov 18 2019 - 07:58:40 PST)
[AMBER] amber maillist
Q Yu
(Mon Nov 18 2019 - 08:41:09 PST)
[AMBER] Conformation of NEB end states changing during 1HEAT
Madhur Aggarwal
(Mon Nov 18 2019 - 09:09:59 PST)
Re: [AMBER] Conformation of NEB end states changing during 1HEAT
Ghoreishi, Delaram
(Mon Nov 18 2019 - 09:29:36 PST)
Re: [AMBER] Conformation of NEB end states changing during 1HEAT
Carlos Simmerling
(Mon Nov 18 2019 - 09:40:13 PST)
Re: [AMBER] Conformation of NEB end states changing during 1HEAT
Madhur Aggarwal
(Mon Nov 18 2019 - 11:44:29 PST)
Re: [AMBER] Conformation of NEB end states changing during 1HEAT
Ghoreishi, Delaram
(Mon Nov 18 2019 - 22:55:15 PST)
Re: [AMBER] Conformation of NEB end states changing during 1HEAT
Madhur Aggarwal
(Tue Nov 19 2019 - 06:51:36 PST)
Re: [AMBER] Conformation of NEB end states changing during 1HEAT
Ghoreishi, Delaram
(Tue Nov 19 2019 - 07:48:53 PST)
Re: [AMBER] Conformation of NEB end states changing during 1HEAT
Carlos Simmerling
(Tue Nov 19 2019 - 07:53:13 PST)
Re: [AMBER] Conformation of NEB end states changing during 1HEAT
Madhur Aggarwal
(Wed Nov 20 2019 - 00:15:46 PST)
Re: [AMBER] amber15 cpptraj closest
Q Yu
(Mon Nov 18 2019 - 10:34:43 PST)
Re: [AMBER] amber15 cpptraj closest
Daniel Roe
(Thu Nov 21 2019 - 08:52:18 PST)
Re: [AMBER] amber15 cpptraj closest
Q Yu
(Fri Nov 22 2019 - 08:55:56 PST)
Re: [AMBER] amber15 cpptraj closest
Daniel Roe
(Fri Nov 22 2019 - 09:07:35 PST)
[AMBER] ATP gamma phosphate distorted in MD
Qing Lv
(Fri Nov 22 2019 - 10:11:23 PST)
Re: [AMBER] ATP gamma phosphate distorted in MD
Zachary Fallon
(Fri Nov 22 2019 - 10:26:28 PST)
Re: [AMBER] ATP gamma phosphate distorted in MD
Qing Lv
(Fri Nov 22 2019 - 22:04:09 PST)
[AMBER] Charge neutrality in QM/MM system
James Kress
(Mon Nov 18 2019 - 15:13:42 PST)
Re: [AMBER] Charge neutrality in QM/MM system
David Case
(Mon Nov 18 2019 - 18:25:13 PST)
Re: [AMBER] Charge neutrality in QM/MM system
James Kress
(Mon Nov 18 2019 - 20:51:09 PST)
[AMBER] PIMD restart error in Amber18
jinfeng liu
(Mon Nov 18 2019 - 19:36:35 PST)
Re: [AMBER] PIMD restart error in Amber18
David A Case
(Thu Nov 21 2019 - 11:56:49 PST)
[AMBER] Problem in generating the .rst file
Airy Sanjeev
(Mon Nov 18 2019 - 21:44:33 PST)
Re: [AMBER] Problem in generating the .rst file
Carlos Simmerling
(Tue Nov 19 2019 - 02:42:40 PST)
[AMBER] Error with addIons
조준범
(Mon Nov 18 2019 - 22:10:09 PST)
Re: [AMBER] Error with addIons
Bill Ross
(Mon Nov 18 2019 - 22:17:02 PST)
Re: [AMBER] Error with addIons
조준범
(Mon Nov 18 2019 - 22:45:54 PST)
Re: [AMBER] Error with addIons
조준범
(Mon Nov 18 2019 - 22:49:37 PST)
Re: [AMBER] Error with addIons
Bill Ross
(Mon Nov 18 2019 - 22:56:45 PST)
Re: [AMBER] Error with addIons
조준범
(Mon Nov 18 2019 - 23:09:33 PST)
Re: [AMBER] Error with addIons
조준범
(Mon Nov 18 2019 - 23:22:03 PST)
Re: [AMBER] Error with addIons
Bill Ross
(Mon Nov 18 2019 - 23:22:42 PST)
Re: [AMBER] Error with addIons
David Case
(Tue Nov 19 2019 - 05:14:10 PST)
[AMBER] amber 16 with nVIDIA Tesla T4 GPU
Schröder, David Christopher
(Tue Nov 19 2019 - 03:51:35 PST)
[AMBER] RROR: I could not understand line - during US
Fabian Glaser
(Tue Nov 19 2019 - 07:55:59 PST)
Re: [AMBER] RROR: I could not understand line - during US
David Case
(Tue Nov 19 2019 - 12:41:43 PST)
Re: [AMBER] RROR: I could not understand line - during US
Fabian Glaser
(Wed Nov 20 2019 - 03:44:35 PST)
Re: [AMBER] RROR: I could not understand line - during US
Bill Ross
(Wed Nov 20 2019 - 03:50:16 PST)
Re: [AMBER] RROR: I could not understand line - during US
Fabian Glaser
(Wed Nov 20 2019 - 05:16:10 PST)
Re: [AMBER] RROR: I could not understand line - during US
David A Case
(Wed Nov 20 2019 - 06:04:59 PST)
Re: [AMBER] RROR: I could not understand line - during US
Fabian Glaser
(Wed Nov 20 2019 - 06:57:09 PST)
Re: [AMBER] RROR: I could not understand line - during US
David A Case
(Wed Nov 20 2019 - 10:46:49 PST)
[AMBER] Error parameterizing a heme using MCPB
Mohamed M. Aboelnga
(Tue Nov 19 2019 - 09:20:01 PST)
Re: [AMBER] Error parameterizing a heme using MCPB
Pengfei Li
(Wed Nov 20 2019 - 19:29:33 PST)
Re: [AMBER] Error parameterizing a heme using MCPB
Mohamed M. Aboelnga
(Thu Nov 21 2019 - 05:50:13 PST)
Re: [AMBER] Error parameterizing a heme using MCPB
Pengfei Li
(Mon Nov 25 2019 - 18:04:28 PST)
Re: [AMBER] Provisional RTX2080 AMBER 18 Performance Numbers
Charles-Alexandre Mattelaer
(Tue Nov 19 2019 - 14:49:20 PST)
Re: [AMBER] Provisional RTX2080 AMBER 18 Performance Numbers
Ross Walker
(Wed Nov 20 2019 - 08:53:46 PST)
Re: [AMBER] Provisional RTX2080 AMBER 18 Performance Numbers
Charles-Alexandre Mattelaer
(Wed Nov 20 2019 - 09:55:15 PST)
Re: [AMBER] Provisional RTX2080 AMBER 18 Performance Numbers
Daniel Roe
(Mon Nov 25 2019 - 05:31:23 PST)
[AMBER] Amber updates brings duplicate patch
viktor drobot
(Wed Nov 20 2019 - 01:50:44 PST)
Re: [AMBER] Amber updates brings duplicate patch
David A Case
(Wed Nov 20 2019 - 06:21:41 PST)
Re: [AMBER] Amber updates brings duplicate patch
viktor drobot
(Wed Nov 20 2019 - 06:27:24 PST)
Re: [AMBER] Amber updates brings duplicate patch
David A Case
(Wed Nov 20 2019 - 10:57:07 PST)
Re: [AMBER] Amber updates brings duplicate patch
viktor drobot
(Thu Nov 21 2019 - 04:03:52 PST)
Re: [AMBER] Amber updates brings duplicate patch
David A Case
(Thu Nov 21 2019 - 05:29:41 PST)
[AMBER] Using NetCDF trajectory files as ParmEd structure
Brian Radak
(Wed Nov 20 2019 - 07:44:15 PST)
Re: [AMBER] Using NetCDF trajectory files as ParmEd structure
Jason Swails
(Wed Nov 27 2019 - 10:58:18 PST)
[AMBER] Fwd: Error in PMEMD installation with MPI
Rahul Verma
(Wed Nov 20 2019 - 19:42:30 PST)
[AMBER] antechamber QM calculation/qmcharge error
Rui Chen
(Wed Nov 20 2019 - 21:25:53 PST)
Re: [AMBER] antechamber QM calculation/qmcharge error
David A Case
(Thu Nov 21 2019 - 05:34:06 PST)
Re: [AMBER] antechamber QM calculation/qmcharge error
Rui Chen
(Thu Nov 21 2019 - 08:48:38 PST)
[AMBER] Force-field with only Bond parameters
Stefano Motta
(Thu Nov 21 2019 - 02:04:44 PST)
Re: [AMBER] Force-field with only Bond parameters
Carlos Simmerling
(Thu Nov 21 2019 - 02:12:33 PST)
Re: [AMBER] Force-field with only Bond parameters
Stefano Motta
(Thu Nov 21 2019 - 02:48:57 PST)
Re: [AMBER] Force-field with only Bond parameters
Carlos Simmerling
(Thu Nov 21 2019 - 02:59:24 PST)
Re: [AMBER] Force-field with only Bond parameters
Stefano Motta
(Thu Nov 21 2019 - 03:12:33 PST)
Re: [AMBER] Force-field with only Bond parameters
Carlos Simmerling
(Thu Nov 21 2019 - 03:21:37 PST)
Re: [AMBER] Force-field with only Bond parameters
Stefano Motta
(Thu Nov 21 2019 - 03:27:39 PST)
Re: [AMBER] Force-field with only Bond parameters
Carlos Simmerling
(Thu Nov 21 2019 - 03:59:52 PST)
Re: [AMBER] Force-field with only Bond parameters
Stefano Motta
(Thu Nov 21 2019 - 05:19:53 PST)
Re: [AMBER] Force-field with only Bond parameters
David A Case
(Thu Nov 21 2019 - 11:47:45 PST)
Re: [AMBER] Force-field with only Bond parameters
Stefano Motta
(Fri Nov 22 2019 - 01:07:02 PST)
[AMBER] Error in themodynamic integration with PMEMD.CUDA
HOCHEOL LIM
(Thu Nov 21 2019 - 07:06:28 PST)
Re: [AMBER] Error in themodynamic integration with PMEMD.CUDA
David A Case
(Thu Nov 21 2019 - 11:53:55 PST)
[AMBER] Error in themodynamic integration with PMEMD.CUDA
HOCHEOL LIM
(Thu Nov 21 2019 - 07:32:29 PST)
[AMBER] Error in the namelist cntrl
Airy Sanjeev
(Thu Nov 21 2019 - 22:04:00 PST)
Re: [AMBER] Error in the namelist cntrl
David A Case
(Fri Nov 22 2019 - 05:30:33 PST)
[AMBER] absolute binding free energy calculations
Debarati DasGupta
(Fri Nov 22 2019 - 10:37:22 PST)
[AMBER] List of GAF2 atom types?
Gustavo Seabra
(Fri Nov 22 2019 - 13:19:28 PST)
Re: [AMBER] List of GAF2 atom types?
David Case
(Fri Nov 22 2019 - 18:55:26 PST)
[AMBER] [Bug-Report] NAB: TER record need a serial number
Johannes Kalliauer
(Mon Nov 25 2019 - 03:06:57 PST)
Re: [AMBER] [Bug-Report] NAB: TER record need a serial number
Daniel Roe
(Mon Nov 25 2019 - 05:21:42 PST)
[AMBER] Finding radial distribution function using cpptraj
Raghav Arora
(Mon Nov 25 2019 - 03:57:22 PST)
Re: [AMBER] Finding radial distribution function using cpptraj
Daniel Roe
(Mon Nov 25 2019 - 05:16:02 PST)
[AMBER] Citation for GAFF2
Gustaf Olsson
(Mon Nov 25 2019 - 07:02:59 PST)
[AMBER] umbrella box size for protein-protein
Fabian Glaser
(Tue Nov 26 2019 - 01:38:39 PST)
[AMBER] Regarding Amber16 installation
dilrajl.bii.a-star.edu.sg
(Tue Nov 26 2019 - 04:15:09 PST)
Re: [AMBER] Regarding Amber16 installation
David Case
(Tue Nov 26 2019 - 04:57:34 PST)
[AMBER] Tleap-complex PDB problem
Rui Chen
(Tue Nov 26 2019 - 17:52:10 PST)
Re: [AMBER] Tleap-complex PDB problem
Lachele Foley
(Tue Nov 26 2019 - 21:07:36 PST)
Re: [AMBER] Tleap-complex PDB problem
Rui Chen
(Wed Nov 27 2019 - 07:37:19 PST)
Re: [AMBER] Tleap-complex PDB problem
David A Case
(Wed Nov 27 2019 - 08:42:31 PST)
Re: [AMBER] Tleap-complex PDB problem
Rui Chen
(Wed Nov 27 2019 - 08:52:12 PST)
Re: [AMBER] Tleap-complex PDB problem
Rui Chen
(Wed Nov 27 2019 - 14:01:40 PST)
[AMBER] ff19SB inpcrd test file missing
David Wang
(Wed Nov 27 2019 - 11:57:37 PST)
Re: [AMBER] ff19SB inpcrd test file missing
Chuan Tian
(Wed Nov 27 2019 - 14:48:39 PST)
Re: [AMBER] ff19SB inpcrd test file missing
David Case
(Thu Nov 28 2019 - 05:48:07 PST)
[AMBER] Obtaining excess molar volumes using Molecular Dynamics
Raghav Arora
(Thu Nov 28 2019 - 02:58:30 PST)
[AMBER] HTTP Error 500 - download
Mattia Pini
(Fri Nov 29 2019 - 00:16:59 PST)
Re: [AMBER] HTTP Error 500 - download
Hai Nguyen
(Fri Nov 29 2019 - 08:42:07 PST)
[AMBER] help on this error
Debarati DasGupta
(Fri Nov 29 2019 - 06:29:45 PST)
Re: [AMBER] help on this error
David Case
(Fri Nov 29 2019 - 18:10:18 PST)
[AMBER] MMGBSA error
RITUPARNA ROY
(Sat Nov 30 2019 - 08:48:26 PST)
Last message date
:
Sat Nov 30 2019 - 09:00:01 PST
Archived on
: Wed Apr 17 2024 - 05:55:46 PDT
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