Re: [AMBER] md simulation with GPU -Geng Dong

From: Ross Walker <ross.rosswalker.co.uk>
Date: Tue, 5 Nov 2019 21:09:35 -0500

Hi Geng,

Check what 'dmesg' returns. I suspect it is showing that there is a mismatch between the driver and the kernel module. Along the lines of:

NVRM: API mismatch: the client has the version 430.79, but
           NVRM: this kernel module has the version 410.76. Please
           NVRM: make sure that this kernel module and all NVIDIA driver
           NVRM: components have the same version.
If so then do the following:

sudo bash
uname -a

Linux blah 4.13.0-43-generic #48~16.04.1-Ubuntu SMP Thu May 17 12:56:46 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
update-initramfs -c -k 4.13.0-43-generic #replacing the 4.13... here with the version uname -a gave you.

Once that completes reboot and hopefully you should be good.

All the best
Ross

> On Nov 5, 2019, at 9:03 PM, 东庚 <gdong.stu.edu.cn> wrote:
>
> Hi Gera,
>
> The GPU information:
>
> $ubuntu-drivers devices
>
> == /sys/devices/pci0000:07/0000:07:00.0/0000:08:00.0 ==
> modalias : pci:v000010DEd00001E07sv000010DEsd000012A4bc03sc00i00
> vendor : NVIDIA Corporation
> driver : nvidia-driver-418 - third-party free
> driver : nvidia-driver-430 - distro non-free recommended
> driver : xserver-xorg-video-nouveau - distro free builtin
>
> $nvidia-smi
> Failed to initialize NVML: Driver/library version mismatch
>
>
> $lspci | grep -i nvidia
> 08:00.0 VGA compatible controller: NVIDIA Corporation Device 1e07 (rev a1)
> 08:00.1 Audio device: NVIDIA Corporation Device 10f7 (rev a1)
> 08:00.2 USB controller: NVIDIA Corporation Device 1ad6 (rev a1)
> 08:00.3 Serial bus controller [0c80]: NVIDIA Corporation Device 1ad7 (rev a1)
>
>
> $lspci | grep -i vga
> 02:00.0 VGA compatible controller: Matrox Electronics Systems Ltd. MGA G200e [Pilot] ServerEngines (SEP1) (rev 42)
> 08:00.0 VGA compatible controller: NVIDIA Corporation Device 1e07 (rev a1)
>
>
> I installed the amber18.
>
>
> Best,
>
> Geng
>
>
>
>> Message: 11
>> Date: Tue, 5 Nov 2019 10:18:57 -0300
>> From: Gerardo Zerbetto De Palma <g.zerbetto.gmail.com>
>> Subject: Re: [AMBER] md simulation with GPU ?Geng Dong?
>> To: AMBER Mailing List <amber.ambermd.org>
>> Message-ID:
>> CAOMpsaUAoSXh=N0=UBN3F34awVigyx-RUwOazJt9=yc+ads9AQ.mail.gmail.com>
>> Content-Type: text/plain; charset="UTF-8"
>>
>> Hi Geng! How are you doing?
>> Which model of GPU do you have? Which version of amber are you trying to
>> install?
>> Best regards!
>> Gera!
>
>> El mar., 5 nov. 2019 a las 5:44, ?? (<gdong.stu.edu.cn>) escribi?:
>
>> Hi All?
>> I got a problem when I run the MD simulations with GPU. The problem was
>> about the display diver and cuda driver as is shown below
>>
>> cudaGetDeviceCount failed system has unsupported display driver / cuda
>> driver combination
>>
>>
>> The system of my machine is Ubuntu 18 LTS. Should I install the specified
>> drivers in my machine. Then, which drivers should I use?
>>
>>
>> Thank you in advance.
>>
>>
>> Best,
>>
>> Geng
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
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Received on Tue Nov 05 2019 - 18:30:02 PST
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