Amber Archive Nov 2019: by author

Abhilash J
- [AMBER] Metal ion parameterization using MCPB.py (Sat Nov 09 2019 - 10:42:25 PST)
accuratefreeenergy.gmail.com
- Re: [AMBER] Large GPU performance difference for umbrella sampling methods: (infe=1 and &pmd) vs (nmropt=1 and disang-rst) (Tue Nov 05 2019 - 04:55:49 PST)
Airy Sanjeev
- [AMBER] Error in the namelist cntrl (Thu Nov 21 2019 - 22:04:00 PST)
- [AMBER] Problem in generating the .rst file (Mon Nov 18 2019 - 21:44:33 PST)
- [AMBER] Problem running production run (Sat Nov 16 2019 - 00:48:04 PST)
Ajeet Kumar Yadav
- [AMBER] Calculation Tetrahedral Order Parameter of Water (Thu Nov 14 2019 - 10:22:44 PST)
- [AMBER] velocity autocorrelation (Sun Nov 03 2019 - 10:00:28 PST)
Akinpelu Olayinka
- Re: [AMBER] tleap error (Fri Nov 08 2019 - 03:50:09 PST)
Alen Ahmetovic
- [AMBER] mmbpsa.py error (Tue Nov 05 2019 - 16:25:26 PST)
Bill Ross
- Re: [AMBER] RROR: I could not understand line - during US (Wed Nov 20 2019 - 03:50:16 PST)
- Re: [AMBER] Error with addIons (Mon Nov 18 2019 - 23:22:42 PST)
- Re: [AMBER] Error with addIons (Mon Nov 18 2019 - 22:56:45 PST)
- Re: [AMBER] Error with addIons (Mon Nov 18 2019 - 22:17:02 PST)
- Re: [AMBER] Problem running production run (Sat Nov 16 2019 - 01:33:23 PST)
- Re: [AMBER] Problem running production run (Sat Nov 16 2019 - 00:54:11 PST)
- Re: [AMBER] How to check the convergence of NEB calculation? (Mon Nov 11 2019 - 03:40:58 PST)
- Re: [AMBER] tleap error (Fri Nov 08 2019 - 04:14:30 PST)
- Re: [AMBER] Parameter file not saved (Sun Nov 03 2019 - 03:47:49 PST)
Brian Radak
- [AMBER] Using NetCDF trajectory files as ParmEd structure (Wed Nov 20 2019 - 07:44:15 PST)
- [AMBER] Making ParmEd play nice with OpenEye? (Mon Nov 11 2019 - 07:52:58 PST)
Carlos Simmerling
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 03:59:52 PST)
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 03:21:37 PST)
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 02:59:24 PST)
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 02:12:33 PST)
- Re: [AMBER] Conformation of NEB end states changing during 1HEAT (Tue Nov 19 2019 - 07:53:13 PST)
- Re: [AMBER] Problem in generating the .rst file (Tue Nov 19 2019 - 02:42:40 PST)
- Re: [AMBER] Conformation of NEB end states changing during 1HEAT (Mon Nov 18 2019 - 09:40:13 PST)
- Re: [AMBER] jump in monomer position (Wed Nov 06 2019 - 13:02:50 PST)
- Re: [AMBER] Parameter file not saved (Sun Nov 03 2019 - 04:47:19 PST)
Charles-Alexandre Mattelaer
- Re: [AMBER] Provisional RTX2080 AMBER 18 Performance Numbers (Wed Nov 20 2019 - 09:55:15 PST)
- Re: [AMBER] Provisional RTX2080 AMBER 18 Performance Numbers (Tue Nov 19 2019 - 14:49:20 PST)
- Re: [AMBER] How to check the convergence of NEB calculation? (Mon Nov 11 2019 - 04:16:37 PST)
- Re: [AMBER] How to check the convergence of NEB calculation? (Mon Nov 11 2019 - 00:33:05 PST)
Christina Bergonzo
- Re: [AMBER] NMR refined MD (Tue Nov 12 2019 - 10:18:39 PST)
Chuan Tian
- Re: [AMBER] ff19SB inpcrd test file missing (Wed Nov 27 2019 - 14:48:39 PST)
Daniel Roe
- Re: [AMBER] Provisional RTX2080 AMBER 18 Performance Numbers (Mon Nov 25 2019 - 05:31:23 PST)
- Re: [AMBER] [Bug-Report] NAB: TER record need a serial number (Mon Nov 25 2019 - 05:21:42 PST)
- Re: [AMBER] Finding radial distribution function using cpptraj (Mon Nov 25 2019 - 05:16:02 PST)
- Re: [AMBER] amber15 cpptraj closest (Fri Nov 22 2019 - 09:07:35 PST)
- Re: [AMBER] amber15 cpptraj closest (Thu Nov 21 2019 - 08:52:18 PST)
- Re: [AMBER] Broken AmberTools19 cpptraj compilation for GNU, Intel and PGI on a Cray with -crayxt5 flag (Fri Nov 15 2019 - 11:50:58 PST)
- Re: [AMBER] building openMP cpptraj with intel compiler (Tue Nov 12 2019 - 10:26:10 PST)
- Re: [AMBER] cpptraj msd of center -of-mass motion (Tue Nov 12 2019 - 08:22:29 PST)
- Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ (Tue Nov 12 2019 - 08:21:14 PST)
- Re: [AMBER] how to cluster by cpptraj (Tue Nov 12 2019 - 07:58:52 PST)
- Re: [AMBER] building openMP cpptraj with intel compiler (Tue Nov 12 2019 - 07:03:42 PST)
- Re: [AMBER] building openMP cpptraj with intel compiler (Tue Nov 12 2019 - 06:49:44 PST)
- Re: [AMBER] strip problem in cpptraj (Tue Nov 12 2019 - 05:52:07 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 12:28:49 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 11:54:10 PST)
- Re: [AMBER] velocity autocorrelation (Mon Nov 04 2019 - 11:27:17 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 11:17:11 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 07:20:00 PST)
- Re: [AMBER] cpptraj.MPI query (Sun Nov 03 2019 - 17:00:50 PST)
David A Case
- Re: [AMBER] Tleap-complex PDB problem (Wed Nov 27 2019 - 08:42:31 PST)
- Re: [AMBER] Error in the namelist cntrl (Fri Nov 22 2019 - 05:30:33 PST)
- Re: [AMBER] PIMD restart error in Amber18 (Thu Nov 21 2019 - 11:56:49 PST)
- Re: [AMBER] Error in themodynamic integration with PMEMD.CUDA (Thu Nov 21 2019 - 11:53:55 PST)
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 11:47:45 PST)
- Re: [AMBER] decompose MMGBSA error (Thu Nov 21 2019 - 05:36:03 PST)
- Re: [AMBER] antechamber QM calculation/qmcharge error (Thu Nov 21 2019 - 05:34:06 PST)
- Re: [AMBER] Amber updates brings duplicate patch (Thu Nov 21 2019 - 05:29:41 PST)
- Re: [AMBER] Amber updates brings duplicate patch (Wed Nov 20 2019 - 10:57:07 PST)
- Re: [AMBER] RROR: I could not understand line - during US (Wed Nov 20 2019 - 10:46:49 PST)
- Re: [AMBER] Amber updates brings duplicate patch (Wed Nov 20 2019 - 06:21:41 PST)
- Re: [AMBER] RROR: I could not understand line - during US (Wed Nov 20 2019 - 06:04:59 PST)
- Re: [AMBER] question about prmtop file (Thu Nov 14 2019 - 05:38:23 PST)
- Re: [AMBER] Modification of gaff (Wed Nov 13 2019 - 04:42:21 PST)
- Re: [AMBER] NMR refined MD (Tue Nov 12 2019 - 10:50:37 PST)
- Re: [AMBER] cpptraj msd of center -of-mass motion (Tue Nov 12 2019 - 05:43:00 PST)
- Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ (Mon Nov 11 2019 - 04:50:07 PST)
- Re: [AMBER] tleap error (Fri Nov 08 2019 - 05:25:11 PST)
- Re: [AMBER] compiling Amber with gcc 9.2 and intel mpi 2019 (Thu Nov 07 2019 - 11:50:49 PST)
- Re: [AMBER] error in namelist (Tue Nov 05 2019 - 09:47:52 PST)
- Re: [AMBER] Parameter file GTP or GMP containing tRNA (Mon Nov 04 2019 - 04:36:17 PST)
David Case
- Re: [AMBER] help on this error (Fri Nov 29 2019 - 18:10:18 PST)
- Re: [AMBER] ff19SB inpcrd test file missing (Thu Nov 28 2019 - 05:48:07 PST)
- Re: [AMBER] Regarding Amber16 installation (Tue Nov 26 2019 - 04:57:34 PST)
- Re: [AMBER] List of GAF2 atom types? (Fri Nov 22 2019 - 18:55:26 PST)
- Re: [AMBER] RROR: I could not understand line - during US (Tue Nov 19 2019 - 12:41:43 PST)
- Re: [AMBER] Error with addIons (Tue Nov 19 2019 - 05:14:10 PST)
- Re: [AMBER] Charge neutrality in QM/MM system (Mon Nov 18 2019 - 18:25:13 PST)
- Re: [AMBER] decompose MMGBSA error (Mon Nov 18 2019 - 04:35:12 PST)
- Re: [AMBER] Simulation run issue (Mon Nov 18 2019 - 04:27:52 PST)
- Re: [AMBER] Error in PMEMD installation with MPI (Mon Nov 18 2019 - 04:22:38 PST)
- Re: [AMBER] Minimization of ethanol in water (Wed Nov 06 2019 - 14:25:17 PST)
- Re: [AMBER] mmbpsa.py error (Tue Nov 05 2019 - 17:45:29 PST)
- Re: [AMBER] Parameter file not saved (Sun Nov 03 2019 - 04:54:31 PST)
David Cerutti
- Re: [AMBER] Does amber work with NVIDIA RTX6000? (Sat Nov 16 2019 - 09:05:16 PST)
- Re: [AMBER] Does amber work with NVIDIA RTX6000? (Fri Nov 15 2019 - 19:16:01 PST)
David Wang
- [AMBER] ff19SB inpcrd test file missing (Wed Nov 27 2019 - 11:57:37 PST)
Debarati DasGupta
- [AMBER] help on this error (Fri Nov 29 2019 - 06:29:45 PST)
- [AMBER] absolute binding free energy calculations (Fri Nov 22 2019 - 10:37:22 PST)
- [AMBER] error in namelist (Tue Nov 05 2019 - 06:29:22 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 12:50:11 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 12:38:13 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 12:07:53 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 11:41:05 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 07:34:59 PST)
- Re: [AMBER] cpptraj.MPI query (Mon Nov 04 2019 - 06:01:28 PST)
- [AMBER] cpptraj.MPI query (Sun Nov 03 2019 - 09:39:14 PST)
dilrajl.bii.a-star.edu.sg
- [AMBER] Regarding Amber16 installation (Tue Nov 26 2019 - 04:15:09 PST)
Elvis Martis
- Re: [AMBER] decompose MMGBSA error (Thu Nov 28 2019 - 05:12:04 PST)
- Re: [AMBER] decompose MMGBSA error (Thu Nov 21 2019 - 20:32:48 PST)
- Re: [AMBER] decompose MMGBSA error (Wed Nov 20 2019 - 04:38:41 PST)
- Re: [AMBER] decompose MMGBSA error (Mon Nov 18 2019 - 00:45:20 PST)
- Re: [AMBER] decompose MMGBSA error (Sun Nov 17 2019 - 22:07:41 PST)
- Re: [AMBER] decompose MMGBSA error (Fri Nov 15 2019 - 22:21:15 PST)
- Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ (Tue Nov 12 2019 - 02:00:53 PST)
- Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ (Mon Nov 11 2019 - 19:32:48 PST)
emanuele falbo
- [AMBER] MD CYT C : heme bound (Mon Nov 18 2019 - 07:58:40 PST)
Fabian Glaser
- [AMBER] umbrella box size for protein-protein (Tue Nov 26 2019 - 01:38:39 PST)
- Re: [AMBER] RROR: I could not understand line - during US (Wed Nov 20 2019 - 06:57:09 PST)
- Re: [AMBER] RROR: I could not understand line - during US (Wed Nov 20 2019 - 05:16:10 PST)
- Re: [AMBER] RROR: I could not understand line - during US (Wed Nov 20 2019 - 03:44:35 PST)
- [AMBER] RROR: I could not understand line - during US (Tue Nov 19 2019 - 07:55:59 PST)
- Re: [AMBER] jump in monomer position (Wed Nov 06 2019 - 23:26:23 PST)
- Re: [AMBER] mac os catalina..... (oh my god) (Wed Nov 06 2019 - 00:58:05 PST)
- [AMBER] jump in monomer position (Wed Nov 06 2019 - 00:55:55 PST)
- [AMBER] mac os catalina..... (oh my god) (Wed Nov 06 2019 - 00:07:55 PST)
Federico Iacovelli
- [AMBER] Problem with ABMD simulation (Sun Nov 03 2019 - 06:47:39 PST)
Feng Pan
- Re: [AMBER] Problem with ABMD simulation (Sun Nov 03 2019 - 11:39:16 PST)
Gerardo Zerbetto De Palma
- Re: [AMBER] md simulation with GPU （Geng Dong） (Tue Nov 05 2019 - 05:18:57 PST)
Ghoreishi, Delaram
- Re: [AMBER] Conformation of NEB end states changing during 1HEAT (Tue Nov 19 2019 - 07:48:53 PST)
- Re: [AMBER] Conformation of NEB end states changing during 1HEAT (Mon Nov 18 2019 - 22:55:15 PST)
- Re: [AMBER] Conformation of NEB end states changing during 1HEAT (Mon Nov 18 2019 - 09:29:36 PST)
Giulia Paiardi
- [AMBER] 2D graphic visualisation (Wed Nov 13 2019 - 08:42:54 PST)
Gustaf Olsson
- [AMBER] Citation for GAFF2 (Mon Nov 25 2019 - 07:02:59 PST)
- Re: [AMBER] mac os catalina..... (oh my god) (Wed Nov 06 2019 - 00:40:52 PST)
Gustavo Seabra
- [AMBER] List of GAF2 atom types? (Fri Nov 22 2019 - 13:19:28 PST)
Hai Nguyen
- Re: [AMBER] HTTP Error 500 - download (Fri Nov 29 2019 - 08:42:07 PST)
HOCHEOL LIM
- [AMBER] Error in themodynamic integration with PMEMD.CUDA (Thu Nov 21 2019 - 07:32:29 PST)
- [AMBER] Error in themodynamic integration with PMEMD.CUDA (Thu Nov 21 2019 - 07:06:28 PST)
- [AMBER] Error in themodynamic integration with PMEMD.CUDA (Mon Nov 18 2019 - 04:37:49 PST)
James Kress
- Re: [AMBER] Charge neutrality in QM/MM system (Mon Nov 18 2019 - 20:51:09 PST)
- [AMBER] Charge neutrality in QM/MM system (Mon Nov 18 2019 - 15:13:42 PST)
- [AMBER] There is an bug in how Amber preserves charge neutrality in QM/MM system when ORCA is the targeted QM tool. (Sat Nov 16 2019 - 08:08:40 PST)
- [AMBER] Charge neutrality in QM/MM system (Thu Nov 14 2019 - 06:46:21 PST)
Jason Swails
- Re: [AMBER] Using NetCDF trajectory files as ParmEd structure (Wed Nov 27 2019 - 10:58:18 PST)
jinfeng liu
- [AMBER] PIMD restart error in Amber18 (Mon Nov 18 2019 - 19:36:35 PST)
Johannes Kalliauer
- [AMBER] [Bug-Report] NAB: TER record need a serial number (Mon Nov 25 2019 - 03:06:57 PST)
Lachele Foley
- Re: [AMBER] Tleap-complex PDB problem (Tue Nov 26 2019 - 21:07:36 PST)
Lucas Bandeira
- [AMBER] Using the polarizable FF GolP (Tue Nov 12 2019 - 11:42:18 PST)
Madhur Aggarwal
- Re: [AMBER] Conformation of NEB end states changing during 1HEAT (Wed Nov 20 2019 - 00:15:46 PST)
- Re: [AMBER] Conformation of NEB end states changing during 1HEAT (Tue Nov 19 2019 - 06:51:36 PST)
- Re: [AMBER] Conformation of NEB end states changing during 1HEAT (Mon Nov 18 2019 - 11:44:29 PST)
- [AMBER] Conformation of NEB end states changing during 1HEAT (Mon Nov 18 2019 - 09:09:59 PST)
Mattia Pini
- [AMBER] HTTP Error 500 - download (Fri Nov 29 2019 - 00:16:59 PST)
maya nair
- Re: [AMBER] NMR refined MD (Tue Nov 12 2019 - 23:31:08 PST)
- Re: [AMBER] NMR refined MD (Tue Nov 12 2019 - 23:28:11 PST)
- [AMBER] NMR refined MD (Tue Nov 12 2019 - 09:20:03 PST)
Mohamed M. Aboelnga
- Re: [AMBER] Error parameterizing a heme using MCPB (Thu Nov 21 2019 - 05:50:13 PST)
- [AMBER] Error parameterizing a heme using MCPB (Tue Nov 19 2019 - 09:20:01 PST)
MYRIAN TORRES RICO
- [AMBER] tleap error (Fri Nov 08 2019 - 04:11:38 PST)
- [AMBER] tleap error (Fri Nov 08 2019 - 03:31:45 PST)
- [AMBER] tleap error (Fri Nov 08 2019 - 03:31:02 PST)
Neha Gandhi
- [AMBER] different radii sets and GB models (Thu Nov 14 2019 - 18:21:57 PST)
Nisha Amarnath Jonniya
- Re: [AMBER] decompose MMGBSA error (Thu Nov 28 2019 - 04:56:40 PST)
- Re: [AMBER] decompose MMGBSA error (Thu Nov 21 2019 - 20:27:25 PST)
- Re: [AMBER] decompose MMGBSA error (Wed Nov 20 2019 - 22:46:36 PST)
- Re: [AMBER] decompose MMGBSA error (Wed Nov 20 2019 - 03:43:21 PST)
- Re: [AMBER] decompose MMGBSA error (Mon Nov 18 2019 - 20:50:34 PST)
- Re: [AMBER] decompose MMGBSA error (Mon Nov 18 2019 - 00:19:05 PST)
- Re: [AMBER] decompose MMGBSA error (Sat Nov 16 2019 - 18:53:35 PST)
- [AMBER] decompose MMGBSA error (Fri Nov 15 2019 - 21:58:59 PST)
Paulius Kantakevicius
- Re: [AMBER] AMBER18/16 12-6-4LJ Sander TI problem (Sat Nov 16 2019 - 03:20:35 PST)
- [AMBER] AMBER18/16 12-6-4LJ Sander TI problem (Tue Nov 12 2019 - 02:58:51 PST)
Pengfei Li
- Re: [AMBER] Error parameterizing a heme using MCPB (Mon Nov 25 2019 - 18:04:28 PST)
- Re: [AMBER] Error parameterizing a heme using MCPB (Wed Nov 20 2019 - 19:29:33 PST)
- Re: [AMBER] Metal ion parameterization using MCPB.py (Sat Nov 16 2019 - 20:20:08 PST)
- Re: [AMBER] AMBER18/16 12-6-4LJ Sander TI problem (Sat Nov 16 2019 - 18:13:15 PST)
- Re: [AMBER] AMBER18/16 12-6-4LJ Sander TI problem (Fri Nov 15 2019 - 15:32:10 PST)
Pietro Aronica
- Re: [AMBER] different radii sets and GB models (Thu Nov 14 2019 - 18:29:23 PST)
Q Yu
- Re: [AMBER] amber15 cpptraj closest (Fri Nov 22 2019 - 08:55:56 PST)
- Re: [AMBER] amber15 cpptraj closest (Mon Nov 18 2019 - 10:34:43 PST)
- [AMBER] amber maillist (Mon Nov 18 2019 - 08:41:09 PST)
Qing Lv
- Re: [AMBER] ATP gamma phosphate distorted in MD (Fri Nov 22 2019 - 22:04:09 PST)
- [AMBER] ATP gamma phosphate distorted in MD (Fri Nov 22 2019 - 10:11:23 PST)
Raghav Arora
- [AMBER] Obtaining excess molar volumes using Molecular Dynamics (Thu Nov 28 2019 - 02:58:30 PST)
- [AMBER] Finding radial distribution function using cpptraj (Mon Nov 25 2019 - 03:57:22 PST)
Rahul Verma
- [AMBER] Fwd: Error in PMEMD installation with MPI (Wed Nov 20 2019 - 19:42:30 PST)
- [AMBER] Error in PMEMD installation with MPI (Sun Nov 17 2019 - 21:01:52 PST)
Ray Luo
- Re: [AMBER] problem with MM/PB(GB)SA (Geng Dong) (Wed Nov 06 2019 - 09:28:37 PST)
RITUPARNA ROY
- [AMBER] MMGBSA error (Sat Nov 30 2019 - 08:48:26 PST)
Robert Molt
- Re: [AMBER] Problem in Leap PDB Reading (Sun Nov 03 2019 - 16:31:04 PST)
- Re: [AMBER] Problem in Leap PDB Reading (Sun Nov 03 2019 - 14:25:08 PST)
Rosellen, Martin
- Re: [AMBER] Calculate MMGBSA keeping water in binding site (Fri Nov 01 2019 - 10:24:54 PDT)
Ross Walker
- Re: [AMBER] Provisional RTX2080 AMBER 18 Performance Numbers (Wed Nov 20 2019 - 08:53:46 PST)
- Re: [AMBER] md simulation with GPU -Geng Dong (Tue Nov 05 2019 - 18:09:35 PST)
- [AMBER] Open Scientific Computing Roles at GSK. (Mon Nov 04 2019 - 12:48:59 PST)
Rui Chen
- Re: [AMBER] Tleap-complex PDB problem (Wed Nov 27 2019 - 14:01:40 PST)
- Re: [AMBER] Tleap-complex PDB problem (Wed Nov 27 2019 - 08:52:12 PST)
- Re: [AMBER] Tleap-complex PDB problem (Wed Nov 27 2019 - 07:37:19 PST)
- [AMBER] Tleap-complex PDB problem (Tue Nov 26 2019 - 17:52:10 PST)
- Re: [AMBER] antechamber QM calculation/qmcharge error (Thu Nov 21 2019 - 08:48:38 PST)
- [AMBER] antechamber QM calculation/qmcharge error (Wed Nov 20 2019 - 21:25:53 PST)
Sayan Poddar
- [AMBER] Simulation run issue (Sun Nov 17 2019 - 22:03:03 PST)
Schröder, David Christopher
- [AMBER] amber 16 with nVIDIA Tesla T4 GPU (Tue Nov 19 2019 - 03:51:35 PST)
Shenglong Wang
- Re: [AMBER] Does amber work with NVIDIA RTX6000? (Fri Nov 15 2019 - 19:33:27 PST)
- [AMBER] Does amber work with NVIDIA RTX6000? (Fri Nov 15 2019 - 08:35:56 PST)
Sruthi Sudhakar
- [AMBER] reinstallation of amber 14 (Fri Nov 01 2019 - 22:41:49 PDT)
Stefano Motta
- Re: [AMBER] Force-field with only Bond parameters (Fri Nov 22 2019 - 01:07:02 PST)
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 05:19:53 PST)
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 03:27:39 PST)
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 03:12:33 PST)
- Re: [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 02:48:57 PST)
- [AMBER] Force-field with only Bond parameters (Thu Nov 21 2019 - 02:04:44 PST)
student_cbc_1 nnlab
- [AMBER] Parameter file GTP or GMP containing tRNA (Mon Nov 04 2019 - 02:27:35 PST)
- [AMBER] Parameter file not saved (Sun Nov 03 2019 - 03:11:19 PST)
Victor Holanda Rusu
- [AMBER] Broken AmberTools19 cpptraj compilation for GNU, Intel and PGI on a Cray with -crayxt5 flag (Fri Nov 15 2019 - 08:42:20 PST)
viktor drobot
- Re: [AMBER] Amber updates brings duplicate patch (Thu Nov 21 2019 - 04:03:52 PST)
- Re: [AMBER] Amber updates brings duplicate patch (Wed Nov 20 2019 - 06:27:24 PST)
- [AMBER] Amber updates brings duplicate patch (Wed Nov 20 2019 - 01:50:44 PST)
Vlad Cojocaru
- [AMBER] Workshop on Free Energy calculations in Muenster March 11-13 2020 (Thu Nov 14 2019 - 02:41:29 PST)
- Re: [AMBER] building openMP cpptraj with intel compiler (Tue Nov 12 2019 - 10:13:26 PST)
- Re: [AMBER] building openMP cpptraj with intel compiler (Tue Nov 12 2019 - 06:59:38 PST)
- Re: [AMBER] building openMP cpptraj with intel compiler (Fri Nov 08 2019 - 05:34:36 PST)
- [AMBER] building openMP cpptraj with intel compiler (Fri Nov 08 2019 - 05:13:14 PST)
- Re: [AMBER] compiling Amber with gcc 9.2 and intel mpi 2019 (Thu Nov 07 2019 - 11:56:57 PST)
- Re: [AMBER] compiling Amber with gcc 9.2 and intel mpi 2019 (Thu Nov 07 2019 - 06:47:09 PST)
Wesley Michael Botello-Smith
- Re: [AMBER] steered md at constant force (Thu Nov 07 2019 - 16:15:58 PST)
Yong Duan
- Re: [AMBER] Problem in Leap PDB Reading (Tue Nov 05 2019 - 21:48:40 PST)
- Re: [AMBER] Problem in Leap PDB Reading (Sun Nov 03 2019 - 15:07:38 PST)
Zachary Fallon
- Re: [AMBER] ATP gamma phosphate distorted in MD (Fri Nov 22 2019 - 10:26:28 PST)
Åsmund Røhr Kjendseth
- [AMBER] Large GPU performance difference for umbrella sampling methods: (infe=1 and &pmd) vs (nmropt=1 and disang-rst) (Tue Nov 05 2019 - 01:13:23 PST)
东庚
- [AMBER] md simulation with GPU -Geng Dong (Tue Nov 05 2019 - 18:03:07 PST)
- [AMBER] md simulation with GPU （Geng Dong） (Tue Nov 05 2019 - 00:44:27 PST)
- [AMBER] problem with MM/PB(GB)SA (Geng Dong) (Tue Nov 05 2019 - 00:21:53 PST)
石娜
- [AMBER] how to cluster by cpptraj (Mon Nov 11 2019 - 17:12:22 PST)
조준범
- Re: [AMBER] Error with addIons (Mon Nov 18 2019 - 23:22:03 PST)
- Re: [AMBER] Error with addIons (Mon Nov 18 2019 - 23:09:33 PST)
- Re: [AMBER] Error with addIons (Mon Nov 18 2019 - 22:49:37 PST)
- Re: [AMBER] Error with addIons (Mon Nov 18 2019 - 22:45:54 PST)
- [AMBER] Error with addIons (Mon Nov 18 2019 - 22:10:09 PST)
- [AMBER] question about prmtop file (Thu Nov 14 2019 - 01:22:43 PST)
- [AMBER] Modification of gaff (Tue Nov 12 2019 - 19:02:10 PST)
- Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ (Tue Nov 12 2019 - 00:16:39 PST)
- Re: [AMBER] How can I calculate dihedral distribution through CPPTRAJ (Mon Nov 11 2019 - 18:23:40 PST)
- [AMBER] cpptraj msd of center -of-mass motion (Mon Nov 11 2019 - 18:11:02 PST)
- [AMBER] How can I calculate dihedral distribution through CPPTRAJ (Mon Nov 11 2019 - 03:21:01 PST)

Amber Archive Nov 2019 by author