Hi,
I don't see this error with Intel compilers version 19.0.5 on my system.
What is $CXX set to on your system? What is the output of $CXX -v (or
icpc -v) on your system? Maybe the version output is something cpptraj
configure doesn't expect.
-Dan
On Tue, Nov 12, 2019 at 9:59 AM Vlad Cojocaru
<vlad.cojocaru.mpi-muenster.mpg.de> wrote:
>
> Yes, its 19 (sorry for not mentioning)... I still need to modify it manually to make it work ...
>
> Best, Vlad
>
> On 12 November 2019 15:49:44 CET, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> >Hi,
> >
> >What version of AmberTools is this? In the latest (AmberTools19),
> >cpptraj gets configured to use -qopenmp with recent intel compilers.
> >
> >-Dan
> >
> >On Fri, Nov 8, 2019 at 8:34 AM Vlad Cojocaru
> ><vlad.cojocaru.mpi-muenster.mpg.de> wrote:
> >>
> >> Ok, I was missing the "external.config.h" file .... Now if "-openmp"
> >is
> >> changed to "-qopenmp" in all *config.h files, it compiles ...
> >>
> >> Best
> >> Vlad
> >>
> >>
> >> On 11/8/19 2:13 PM, Vlad Cojocaru wrote:
> >> > Dear all,
> >> >
> >> > Building the openmp version of amber executables with the intel
> >2019
> >> > compiler fails with the error below:
> >> > The Amber configure script does not accept the "-qopenmp" flag ...
> >> >
> >> > I noticed that the config.h in $AMBERHOME already uses this flag so
> >what
> >> > I tried fix this by manually changing the config.h headers in the
> >> > relevant src directories but even after changing I still get the
> >same
> >> > error (for icc) ....So, probably I need to change more than I
> >identified ..
> >> >
> >> > Can anyone advise me how to fix this ?
> >> >
> >> > Best,
> >> > Vlad
> >> >
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [SpaceGroup.o] Error 1
> >> > make[4]: *** Waiting for unfinished jobs....
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [ActionFrameCounter.o] Error 1
> >> > make[4]: *** [Action_Align.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [ActionList.o] Error 1
> >> > make[4]: *** [Action_Angle.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [Action_AtomicCorr.o] Error 1
> >> > make[4]: *** [Action.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [Action_AtomicFluct.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [Action_AutoImage.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [Action_AtomMap.o] Error 1
> >> > make[4]: *** [Action_Center.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [Action_Box.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [Action_Bounds.o] Error 1
> >> > make[4]: *** [Action_Channel.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [Action_AreaPerMol.o] Error 1
> >> > icpc: command line error: option '-openmp' is not supported. Please
> >use
> >> > the replacement option '-qopenmp'
> >> > make[4]: *** [Action_Average.o] Error 1
> >> > make[3]: *** [install] Error 2
> >> > make[2]: *** [build_cpptraj] Error 2
> >> > make[1]: *** [openmp] Error 2
> >> > make: *** [install] Error 2
> >> >
> >>
> >> --
> >> Vlad Cojocaru, PD (Habil.), Ph.D.
> >> -----------------------------------------------
> >> Project Group Leader
> >> Department of Cell and Developmental Biology
> >> Max Planck Institute for Molecular Biomedicine
> >> Röntgenstrasse 20, 48149 Münster, Germany
> >> -----------------------------------------------
> >> Tel: +49-251-70365-324; Fax: +49-251-70365-399
> >> Email: vlad.cojocaru[at]mpi-muenster.mpg.de
> >> http://www.mpi-muenster.mpg.de/43241/cojocaru
> >>
> >>
> >> _______________________________________________
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> >
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> Sent from my Android device with K-9 Mail. Please excuse my brevity.
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Received on Tue Nov 12 2019 - 07:30:03 PST
