[AMBER] Parameter file GTP or GMP containing tRNA

From: student_cbc_1 nnlab <studentcbcnnlab.gmail.com>
Date: Mon, 4 Nov 2019 15:57:35 +0530

Respected sir,

We plan to run classical MD simulation of a tRNA molecule containing GTP or
GMP as a base at 5' end before G1. How should we prepare the parameter file
along with the frcmod and mol2 file for that type of tRNA to load in AMBER?


I look forward for the possible solution to the above problem, please.
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Received on Mon Nov 04 2019 - 02:30:01 PST