Amber Archive Mar 2007 By Thread
- Re: AMBER: solvent accessible surface area (SASA) Carlos Simmerling (Thu Mar 01 2007 - 04:10:55 PST)
- Re: AMBER: solvent accessible surface area (SASA) Esther Brugger (Thu Mar 01 2007 - 07:23:04 PST)
- Re: AMBER: solvent accessible surface area (SASA) Carlos Simmerling (Thu Mar 01 2007 - 08:07:51 PST)
- Re: AMBER: solvent accessible surface area (SASA) Esther Brugger (Thu Mar 01 2007 - 08:40:16 PST)
- Re: AMBER: solvent accessible surface area (SASA) David A. Case (Thu Mar 01 2007 - 10:42:31 PST)
- Re: AMBER: solvent accessible surface area (SASA) Esther Brugger (Thu Mar 01 2007 - 11:15:51 PST)
- Re: AMBER: solvent accessible surface area (SASA) Carlos Simmerling (Thu Mar 01 2007 - 14:42:31 PST)
- Re: AMBER: solvent accessible surface area (SASA) Esther Brugger (Thu Mar 01 2007 - 15:58:50 PST)
- Re: AMBER: solvent accessible surface area (SASA) Carlos Simmerling (Fri Mar 02 2007 - 04:14:20 PST)
- Re: AMBER: solvent accessible surface area (SASA) David A. Case (Thu Mar 01 2007 - 08:47:19 PST)
- Re: AMBER: solvent accessible surface area (SASA) Esther Brugger (Thu Mar 01 2007 - 09:03:34 PST)
- Re: AMBER: solvent accessible surface area (SASA) Carlos Simmerling (Thu Mar 01 2007 - 08:07:51 PST)
- Re: AMBER: solvent accessible surface area (SASA) Esther Brugger (Thu Mar 01 2007 - 07:23:04 PST)
- AMBER: Disulfide Problem Beale, John (Thu Mar 01 2007 - 05:49:22 PST)
- Re: AMBER: Disulfide Problem Carlos Simmerling (Thu Mar 01 2007 - 06:15:22 PST)
- RE: AMBER: Disulfide Problem Beale, John (Thu Mar 01 2007 - 06:45:24 PST)
- RE: AMBER: Disulfide Problem Kristina Furse (Thu Mar 01 2007 - 08:19:17 PST)
- Re: AMBER: Disulfide Problem David A. Case (Thu Mar 01 2007 - 09:00:31 PST)
- AMBER: OpenMPI on MacBook Pro -- problems Mike Summers (Fri Mar 02 2007 - 08:48:49 PST)
- Re: AMBER: OpenMPI on MacBook Pro -- problems David A. Case (Fri Mar 02 2007 - 09:36:28 PST)
- Re: AMBER: OpenMPI on MacBook Pro -- problems Mike Summers (Fri Mar 02 2007 - 12:04:17 PST)
- Re: AMBER: OpenMPI on MacBook Pro -- problems Mike Summers (Fri Mar 02 2007 - 12:36:07 PST)
- Re: AMBER: OpenMPI on MacBook Pro -- problems Mike Summers (Sat Mar 03 2007 - 08:07:28 PST)
- AMBER: coordinate changes using ptraj Mike Summers (Sat Mar 03 2007 - 16:34:24 PST)
- Re: AMBER: coordinate changes using ptraj Carlos Simmerling (Sat Mar 03 2007 - 16:44:00 PST)
- Re: AMBER: coordinate changes using ptraj Mike Summers (Sat Mar 03 2007 - 17:39:28 PST)
- Re: AMBER: coordinate changes using ptraj Carlos Simmerling (Sun Mar 04 2007 - 06:19:33 PST)
- Re: AMBER: coordinate changes using ptraj David A. Case (Mon Mar 05 2007 - 08:41:42 PST)
- Re: AMBER: Disulfide Problem xiaoqin huang (Fri Mar 02 2007 - 06:48:14 PST)
- Re: AMBER: Disulfide Problem Carlos Simmerling (Fri Mar 02 2007 - 06:54:42 PST)
- RE: AMBER: Disulfide Problem Beale, John (Thu Mar 01 2007 - 06:45:24 PST)
- Re: AMBER: Disulfide Problem Carlos Simmerling (Thu Mar 01 2007 - 06:15:22 PST)
- Re: AMBER: RESP calculation of modified nucleotides mathew k varghese (Thu Mar 01 2007 - 06:33:00 PST)
- Re: AMBER: RESP calculation of modified nucleotides Raviprasad Aduri (Thu Mar 01 2007 - 10:12:54 PST)
- Re: AMBER: RESP calculation of modified nucleotides mathew k varghese (Thu Mar 01 2007 - 19:22:43 PST)
- Re: AMBER: RESP calculation of modified nucleotides mathew k varghese (Fri Mar 02 2007 - 03:35:41 PST)
- Re: AMBER: RESP calculation of modified nucleotides Raviprasad Aduri (Fri Mar 02 2007 - 09:16:39 PST)
- Re: AMBER: RESP calculation of modified nucleotides mathew k varghese (Thu Mar 01 2007 - 19:22:43 PST)
- Re: AMBER: RESP calculation of modified nucleotides Raviprasad Aduri (Thu Mar 01 2007 - 10:12:54 PST)
- AMBER: Restart from restart file obtained from ptraj with added velocities j j (Thu Mar 01 2007 - 08:17:41 PST)
- Re: AMBER: Restart from restart file obtained from ptraj with added velocities Thomas Cheatham III (Thu Mar 01 2007 - 08:51:28 PST)
- Re: AMBER: Restart from restart file obtained from ptraj with added velocities j j (Thu Mar 01 2007 - 09:43:13 PST)
- Re: AMBER: Restart from restart file obtained from ptraj with added velocities Thomas Cheatham III (Thu Mar 01 2007 - 08:51:28 PST)
- Re: AMBER: momentum and periodic boundary condition David A. Case (Thu Mar 01 2007 - 08:52:00 PST)
- AMBER: [rsachdeva@imtech.res.in: A query] David A. Case (Thu Mar 01 2007 - 09:02:27 PST)
- Re: AMBER: [rsachdeva@imtech.res.in: A query] Viktor Hornak (Thu Mar 01 2007 - 10:56:40 PST)
- Re: AMBER: SCF convergence issues Steven Winfield (Fri Mar 02 2007 - 05:43:58 PST)
- AMBER: qm/mm ti Ben Sattelle (Fri Mar 02 2007 - 05:54:53 PST)
- Re: AMBER: qm/mm ti Adrian Roitberg (Fri Mar 02 2007 - 06:02:49 PST)
- AMBER: Restart Files Steve Seibold (Fri Mar 02 2007 - 07:26:03 PST)
- Re: AMBER: Restart Files Carlos Simmerling (Fri Mar 02 2007 - 07:32:46 PST)
- RE: AMBER: Restart Files Steve Seibold (Fri Mar 02 2007 - 09:01:19 PST)
- Re: AMBER: Restart Files Gustavo Seabra (Fri Mar 02 2007 - 10:06:16 PST)
- RE: AMBER: Restart Files Steve Seibold (Fri Mar 02 2007 - 11:52:39 PST)
- Re: AMBER: Restart Files Gustavo Seabra (Fri Mar 02 2007 - 13:28:26 PST)
- RE: AMBER: Restart Files Steve Seibold (Fri Mar 02 2007 - 09:01:19 PST)
- Re: AMBER: Restart Files Carlos Simmerling (Fri Mar 02 2007 - 07:32:46 PST)
- AMBER: restraints during MD Seth Lilavivat (Fri Mar 02 2007 - 08:16:05 PST)
- Re: AMBER: restraints during MD Carlos Simmerling (Fri Mar 02 2007 - 08:27:50 PST)
- AMBER: reproducibility between software Stern, Julie (Fri Mar 02 2007 - 08:34:32 PST)
- Re: AMBER: reproducibility between software Carlos Simmerling (Fri Mar 02 2007 - 08:43:04 PST)
- Re: AMBER: reproducibility between software Thomas Cheatham III (Fri Mar 02 2007 - 09:32:35 PST)
- Re: AMBER: reproducibility between software Robert Duke (Fri Mar 02 2007 - 09:49:01 PST)
- AMBER: Amber 9 make parallel fails with mpich Rene Salmon (Fri Mar 02 2007 - 09:45:37 PST)
- Re: AMBER: Amber 9 make parallel fails with mpich David A. Case (Fri Mar 02 2007 - 09:59:50 PST)
- AMBER: ptraj average structure strip water Youyi Peng (Fri Mar 02 2007 - 11:52:02 PST)
- AMBER: Calcium parameters Lei Jia (Fri Mar 02 2007 - 11:58:27 PST)
- Re: AMBER: Calcium parameters Qing Zhang (Fri Mar 02 2007 - 15:10:24 PST)
- AMBER: Restraints on modified NA's Seth Lilavivat (Fri Mar 02 2007 - 13:56:07 PST)
- Re: AMBER: Restraints on modified NA's David A. Case (Mon Mar 05 2007 - 08:44:56 PST)
- AMBER: calculate RMSD of only chain C ÕÔÑÇÑ© (Fri Mar 02 2007 - 18:21:33 PST)
- Re: AMBER: calculate RMSD of only chain C Carlos Simmerling (Sat Mar 03 2007 - 06:51:34 PST)
- AMBER: TI calculation: charge is not zero in the perturbed state brmeher.iitg.ernet.in (Sat Mar 03 2007 - 12:32:02 PST)
- Re: AMBER: TI calculation: charge is not zero in the perturbed state David A. Case (Sat Mar 03 2007 - 13:11:52 PST)
- AMBER: denaturing salt conditions Sean Rathlef (Sat Mar 03 2007 - 14:35:45 PST)
- Re: AMBER: denaturing salt conditions Jiri Sponer (Sat Mar 03 2007 - 16:28:28 PST)
- AMBER: Question about translational and rotational degree of freedom in MM-PBSA v9 computations Cenk Andac (Sun Mar 04 2007 - 04:06:22 PST)
- AMBER: prep file limit exceeding gurpreet singh (Sun Mar 04 2007 - 23:52:49 PST)
- Re: AMBER: prep file limit exceeding David A. Case (Mon Mar 05 2007 - 21:25:20 PST)
- AMBER: distance calculation! r. a. (Mon Mar 05 2007 - 00:43:45 PST)
- AMBER: psi , phi angles deepti nayar (Mon Mar 05 2007 - 03:07:41 PST)
- Re: AMBER: psi , phi angles Carlos Simmerling (Mon Mar 05 2007 - 04:08:27 PST)
- Re: AMBER: psi , phi angles Piotr Cieplak (Mon Mar 05 2007 - 09:29:30 PST)
- Re: AMBER: psi , phi angles Carlos Simmerling (Mon Mar 05 2007 - 09:39:40 PST)
- Re: AMBER: psi , phi angles M. L. Dodson (Mon Mar 05 2007 - 09:42:13 PST)
- Re: AMBER: psi , phi angles Piotr Cieplak (Mon Mar 05 2007 - 10:30:46 PST)
- Re: AMBER: psi , phi angles Carlos Simmerling (Mon Mar 05 2007 - 10:56:46 PST)
- Re: AMBER: psi , phi angles Piotr Cieplak (Mon Mar 05 2007 - 11:27:13 PST)
- Re: AMBER: psi , phi angles Ilyas Yildirim (Tue Mar 06 2007 - 04:10:32 PST)
- Re: AMBER: psi , phi angles Piotr Cieplak (Mon Mar 05 2007 - 09:29:30 PST)
- Re: AMBER: psi , phi angles Carlos Simmerling (Mon Mar 05 2007 - 04:08:27 PST)
- AMBER: pbsa installation problem bala (Mon Mar 05 2007 - 04:34:32 PST)
- Re: AMBER: pbsa installation problem David A. Case (Mon Mar 05 2007 - 09:48:13 PST)
- AMBER: Beale, John (Mon Mar 05 2007 - 09:50:26 PST)
- AMBER: Beale, John (Mon Mar 05 2007 - 09:51:29 PST)
- AMBER: constraint pdb file Stern, Julie (Mon Mar 05 2007 - 13:06:47 PST)
- AMBER: mm_pbsa individual contributions of residues AYTUG TUNCEL (Mon Mar 05 2007 - 15:12:54 PST)
- AMBER: how to incorporate ismem =1 into mm_pbsa AYTUG TUNCEL (Mon Mar 05 2007 - 15:32:19 PST)
- AMBER: any general approach to create SiO2 wall Sisir Das (Mon Mar 05 2007 - 20:46:42 PST)
- AMBER: Trimannoside Problem Sandeep Kaushik (Tue Mar 06 2007 - 04:44:20 PST)
- Re: AMBER: Trimannoside Problem kkirschn.hamilton.edu (Tue Mar 06 2007 - 10:13:43 PST)
- Re: AMBER: Trimannoside Problem Sandeep Kaushik (Wed Mar 07 2007 - 23:02:02 PST)
- Re: AMBER: Trimannoside Problem kkirschn.hamilton.edu (Thu Mar 08 2007 - 05:37:27 PST)
- Re: AMBER: Trimannoside Problem Austin B. Yongye (Thu Mar 08 2007 - 06:09:48 PST)
- Re: AMBER: Trimannoside Problem Sandeep Kaushik (Mon Mar 19 2007 - 00:02:54 PDT)
- Re: AMBER: Trimannoside Problem Sandeep Kaushik (Wed Mar 07 2007 - 23:02:02 PST)
- Re: AMBER: Trimannoside Problem kkirschn.hamilton.edu (Tue Mar 06 2007 - 10:13:43 PST)
- AMBER: how is the standard deviations calculated in mm-pbsa? Magne Olufsen (Tue Mar 06 2007 - 04:58:17 PST)
- Re: AMBER: how is the standard deviations calculated in mm-pbsa? David A. Case (Tue Mar 06 2007 - 17:13:55 PST)
- AMBER: DHAS_10_12 compilation aborted for egb.f Jesus Angulo (Tue Mar 06 2007 - 06:31:28 PST)
- Re: AMBER: DHAS_10_12 compilation aborted for egb.f David A. Case (Tue Mar 06 2007 - 08:31:10 PST)
- RE: AMBER: DHAS_10_12 compilation aborted for egb.f Jesus Angulo (Tue Mar 06 2007 - 09:41:37 PST)
- Re: AMBER: DHAS_10_12 compilation aborted for egb.f David A. Case (Wed Mar 07 2007 - 10:11:21 PST)
- RE: AMBER: DHAS_10_12 compilation aborted for egb.f Jesus Angulo (Tue Mar 06 2007 - 09:41:37 PST)
- Re: AMBER: DHAS_10_12 compilation aborted for egb.f David A. Case (Tue Mar 06 2007 - 08:31:10 PST)
- AMBER: how to modify map.DG-AMBER file? Seth Lilavivat (Tue Mar 06 2007 - 12:55:40 PST)
- Re: AMBER: how to modify map.DG-AMBER file? David A. Case (Tue Mar 06 2007 - 17:06:57 PST)
- AMBER: addles segmentation fault deepti nayar (Tue Mar 06 2007 - 23:18:39 PST)
- Re: AMBER: addles segmentation fault David A. Case (Wed Mar 07 2007 - 09:23:21 PST)
- AMBER: simulation of the phosphorylated protein Fenghui Fan (Wed Mar 07 2007 - 17:20:09 PST)
- Re: AMBER: addles segmentation fault deepti nayar (Thu Mar 08 2007 - 01:35:43 PST)
- Re: AMBER: addles segmentation fault David A. Case (Wed Mar 07 2007 - 09:23:21 PST)
- AMBER: Topology file problem in TI ! Pradipta Bandyopadhyay (Wed Mar 07 2007 - 03:08:39 PST)
- Re: AMBER: Topology file problem in TI ! Thomas Steinbrecher (Wed Mar 07 2007 - 08:48:10 PST)
- Re: AMBER: Topology file problem in TI ! Ilyas Yildirim (Wed Mar 07 2007 - 10:09:39 PST)
- Re: AMBER: Topology file problem in TI ! Thomas Steinbrecher (Wed Mar 07 2007 - 11:35:29 PST)
- Re: AMBER: Topology file problem in TI ! Pradipta Bandyopadhyay (Wed Mar 07 2007 - 21:55:26 PST)
- Re: AMBER: Topology file problem in TI ! David A. Case (Thu Mar 08 2007 - 07:59:22 PST)
- Re: AMBER: Topology file problem in TI ! Pradipta Bandyopadhyay (Thu Mar 08 2007 - 08:18:58 PST)
- Re: AMBER: Topology file problem in TI ! Ilyas Yildirim (Wed Mar 07 2007 - 10:09:39 PST)
- Re: AMBER: Topology file problem in TI ! Thomas Steinbrecher (Wed Mar 07 2007 - 08:48:10 PST)
- Re: AMBER: Amber 9, sander imin = 5, -y flag S.Sundar Raman (Wed Mar 07 2007 - 10:05:19 PST)
- Re: AMBER: Amber 9, sander imin = 5, -y flag Carlos Simmerling (Wed Mar 07 2007 - 11:15:22 PST)
- Re: AMBER: Problems with QMMM tests on Altix Roberto Gomperts (Thu Mar 08 2007 - 15:39:14 PST)
- AMBER: van der Waals parameters and 6-12 potential parameters of NB in parm99.dat? Chengwen Chen (Fri Mar 09 2007 - 00:04:00 PST)
- Re: AMBER: van der Waals parameters and 6-12 potential parameters of NB in parm99.dat? Carlos Simmerling (Fri Mar 09 2007 - 04:07:48 PST)
- Re: AMBER: van der Waals parameters and 6-12 potential parameters of NB in parm99.dat? Chengwen Chen (Fri Mar 09 2007 - 23:37:06 PST)
- AMBER: Problem with PCSHIFT module Edoardo Saccenti (Fri Mar 30 2007 - 04:20:37 PDT)
- Re: AMBER: Problem with PCSHIFT module David A. Case (Sat Mar 31 2007 - 21:13:12 PDT)
- Re: AMBER: van der Waals parameters and 6-12 potential parameters of NB in parm99.dat? Carlos Simmerling (Fri Mar 09 2007 - 04:07:48 PST)
- AMBER: problem with ptraj with calculating auto time correlation functions Terry Lang (Fri Mar 09 2007 - 10:36:14 PST)
- Re: AMBER: problem with ptraj with calculating auto time correlation functions David A. Case (Fri Mar 09 2007 - 17:01:44 PST)
- Re: AMBER: problem with ptraj with calculating auto time correlation functions Terry Lang (Sat Mar 10 2007 - 07:59:09 PST)
- Re: AMBER: problem with ptraj with calculating auto time correlation functions David A. Case (Sat Mar 10 2007 - 09:34:32 PST)
- Re: AMBER: problem with ptraj with calculating auto time correlation functions Terry Lang (Sat Mar 10 2007 - 07:59:09 PST)
- Re: AMBER: problem with ptraj with calculating auto time correlation functions David A. Case (Fri Mar 09 2007 - 17:01:44 PST)
- AMBER: abnormal termination of tleap Pankaj R. Daga (Fri Mar 09 2007 - 14:24:37 PST)
- AMBER: rmsd calculation in ptraj gurpreet singh (Sat Mar 10 2007 - 05:24:50 PST)
- AMBER: rmsd calculation in ptraj gurpreet singh (Sat Mar 10 2007 - 05:38:28 PST)
- Re: AMBER: rmsd calculation in ptraj Carlos Simmerling (Sat Mar 10 2007 - 06:26:34 PST)
- AMBER: rmsd calculation in ptraj II gurpreet singh (Sat Mar 10 2007 - 20:37:10 PST)
- Re: AMBER: rmsd calculation in ptraj II David A. Case (Sat Mar 10 2007 - 21:55:32 PST)
- AMBER: unable to run test Anju Sharma (Sun Mar 11 2007 - 22:14:03 PDT)
- Re: AMBER: unable to run test David A. Case (Sun Mar 11 2007 - 23:54:34 PDT)
- AMBER: addles deepti nayar (Sun Mar 11 2007 - 23:29:37 PDT)
- Re: AMBER: addles Carlos Simmerling (Mon Mar 12 2007 - 04:28:20 PDT)
- Re: AMBER: addles deepti nayar (Mon Mar 12 2007 - 04:37:27 PDT)
- Re: AMBER: addles Carlos Simmerling (Mon Mar 12 2007 - 04:28:20 PDT)
- AMBER: Essential ions and water molecules in MMPBSA computations Cenk Andac (Mon Mar 12 2007 - 02:13:56 PDT)
- Re: AMBER: Essential ions and water molecules in MMPBSA computations Jiri Sponer (Mon Mar 12 2007 - 06:05:49 PDT)
- Re: AMBER: Essential ions and water molecules in MMPBSA computations Cenk Andac (Mon Mar 12 2007 - 07:03:03 PDT)
- Re: AMBER: Essential ions and water molecules in MMPBSA computations Jiri Sponer (Mon Mar 12 2007 - 07:44:08 PDT)
- Re: AMBER: Essential ions and water molecules in MMPBSA computations Cenk Andac (Mon Mar 19 2007 - 06:16:42 PDT)
- Re: AMBER: Essential ions and water molecules in MMPBSA computations David A. Case (Mon Mar 19 2007 - 08:02:41 PDT)
- Re: AMBER: Essential ions and water molecules in MMPBSA computations Cenk Andac (Mon Mar 19 2007 - 06:30:00 PDT)
- Re: AMBER: Essential ions and water molecules in MMPBSA computations Cenk Andac (Mon Mar 12 2007 - 07:03:03 PDT)
- Re: AMBER: Essential ions and water molecules in MMPBSA computations Jiri Sponer (Mon Mar 12 2007 - 06:05:49 PDT)
- AMBER: NEB tutorial deepti nayar (Mon Mar 12 2007 - 03:03:17 PDT)
- AMBER: The parallel test fails while sander.MPI seems to be installed correctly Mostafa Sadighi (Mon Mar 12 2007 - 04:43:14 PDT)
- Re: AMBER: The parallel test fails while sander.MPI seems to be installed correctly Carlos Simmerling (Mon Mar 12 2007 - 04:51:38 PDT)
- Re: AMBER: The parallel test fails while sander.MPI seems to be installed correctly Gustavo Seabra (Mon Mar 12 2007 - 06:23:50 PDT)
- AMBER: DNA Helicoïdal Plots over time Stéphane Téletchéa (Mon Mar 12 2007 - 05:31:02 PDT)
- Re: AMBER: DNA Helicoïdal Plots over time Vitor Felix (Mon Mar 12 2007 - 05:51:12 PDT)
- AMBER: dna forcefield: PARMBSC0 Alberto Perez (Wed Mar 14 2007 - 00:14:36 PDT)
- AMBER: Can I measure improper torsion by ptarj? Chengwen Chen (Mon Mar 12 2007 - 09:21:55 PDT)
- Re: AMBER: Can I measure improper torsion by ptarj? David A. Case (Mon Mar 12 2007 - 09:36:07 PDT)
- Re: AMBER: Can I measure improper torsion by ptarj? Chengwen Chen (Mon Mar 12 2007 - 21:18:24 PDT)
- Re: AMBER: Can I measure improper torsion by ptarj? David A. Case (Tue Mar 13 2007 - 09:55:13 PDT)
- Re: AMBER: Can I measure improper torsion by ptarj? Chengwen Chen (Mon Mar 12 2007 - 21:18:24 PDT)
- Re: AMBER: Can I measure improper torsion by ptarj? Bill Ross (Tue Mar 13 2007 - 10:23:24 PDT)
- Re: AMBER: Can I measure improper torsion by ptarj? David A. Case (Mon Mar 12 2007 - 09:36:07 PDT)
- AMBER: hi.. Anju Sharma (Tue Mar 13 2007 - 04:59:24 PDT)
- Re: AMBER: hi.. Carlos Simmerling (Tue Mar 13 2007 - 05:08:47 PDT)
- Re: AMBER: hi.. Anju Sharma (Tue Mar 13 2007 - 05:15:27 PDT)
- Re: AMBER: hi.. Carlos Simmerling (Tue Mar 13 2007 - 05:20:40 PDT)
- Re: AMBER: hi.. Anju Sharma (Tue Mar 13 2007 - 05:28:23 PDT)
- Re: AMBER: hi.. Anju Sharma (Tue Mar 13 2007 - 05:29:28 PDT)
- RE: AMBER: hi.. Rafi Ahmad (Tue Mar 13 2007 - 05:32:18 PDT)
- RE: AMBER: hi.. Rafi Ahmad (Tue Mar 13 2007 - 05:20:28 PDT)
- Re: AMBER: hi.. Anju Sharma (Tue Mar 13 2007 - 05:15:27 PDT)
- Re: AMBER: hi.. Carlos Simmerling (Tue Mar 13 2007 - 05:08:47 PDT)
- AMBER: problem with mm_pbsa Yves Boulard (Tue Mar 13 2007 - 07:21:22 PDT)
- AMBER: poor performance of sander on a quad-core linux machine Lillian chong (Tue Mar 13 2007 - 10:27:31 PDT)
- Re: AMBER: poor performance of sander on a quad-core linux machine David A. Case (Tue Mar 13 2007 - 10:42:48 PDT)
- AMBER: problem while running minimisation Anju Sharma (Tue Mar 13 2007 - 21:10:15 PDT)
- Re: AMBER: problem while running minimisation Anju Sharma (Tue Mar 13 2007 - 21:19:03 PDT)
- AMBER: Problem Solved Anju Sharma (Tue Mar 13 2007 - 21:19:57 PDT)
- AMBER: NEB tutorial and addles deepti nayar (Tue Mar 13 2007 - 21:28:20 PDT)
- RE: AMBER: NEB tutorial and addles Ross Walker (Thu Mar 15 2007 - 09:21:29 PDT)
- AMBER: problem while analysing result Anju Sharma (Tue Mar 13 2007 - 22:38:37 PDT)
- Re: AMBER: problem while analysing result puneet kacker (Tue Mar 13 2007 - 22:59:20 PDT)
- Re: AMBER: problem while analysing result Anju Sharma (Tue Mar 13 2007 - 23:27:20 PDT)
- Re: AMBER: problem while analysing result Syed Tarique Moin (Tue Mar 13 2007 - 23:43:59 PDT)
- Re: AMBER: problem while analysing result puneet kacker (Tue Mar 13 2007 - 23:46:22 PDT)
- Re: AMBER: problem while analysing result Anju Sharma (Tue Mar 13 2007 - 23:27:20 PDT)
- Re: AMBER: problem while analysing result puneet kacker (Tue Mar 13 2007 - 22:59:20 PDT)
- AMBER: Need help in Analysis Anju Sharma (Wed Mar 14 2007 - 02:13:03 PDT)
- Re: AMBER: Need help in Analysis Heike.Meiselbach.chemie.uni-erlangen.de (Wed Mar 14 2007 - 03:35:34 PDT)
- Re: AMBER: Need help in Analysis Gustavo Seabra (Wed Mar 14 2007 - 03:39:51 PDT)
- AMBER: AMBER hydrophobic Box : script Sophie Barbe (Wed Mar 14 2007 - 03:48:50 PDT)
- Re: AMBER: AMBER hydrophobic Box : script David A. Case (Wed Mar 14 2007 - 08:29:47 PDT)
- Re: AMBER: AMBER hydrophobic Box : script Sophie Barbe (Wed Mar 14 2007 - 09:00:30 PDT)
- Re: AMBER: AMBER hydrophobic Box : script David A. Case (Wed Mar 14 2007 - 09:22:41 PDT)
- AMBER: Lipid bilayer nag raj (Wed Mar 14 2007 - 20:51:19 PDT)
- Re: AMBER: AMBER hydrophobic Box : script David A. Case (Wed Mar 14 2007 - 08:29:47 PDT)
- AMBER: torsion angle deepti nayar (Wed Mar 14 2007 - 05:03:08 PDT)
- Re: AMBER: torsion angle Carlos Simmerling (Wed Mar 14 2007 - 05:27:02 PDT)
- Re: AMBER: torsion angle deepti nayar (Wed Mar 14 2007 - 23:13:43 PDT)
- AMBER: problem decomposing energies (MMPBSA) Cyril Bauvais (Thu Mar 15 2007 - 02:27:57 PDT)
- AMBER: problem decomposing energies (MMPBSA) Cyril Bauvais (Tue Mar 20 2007 - 04:15:29 PDT)
- Re: AMBER: torsion angle deepti nayar (Wed Mar 14 2007 - 23:13:43 PDT)
- Re: AMBER: torsion angle Carlos Simmerling (Wed Mar 14 2007 - 05:27:02 PDT)
- AMBER: Question about Boron Kara Di Giorgio (Wed Mar 14 2007 - 10:15:22 PDT)
- AMBER: mmpbsa free energy pairwise decomposition Gianluca Degliesposti (Wed Mar 14 2007 - 11:54:32 PDT)
- AMBER: Regarding counter ions Rafi Ahmad (Wed Mar 14 2007 - 13:00:59 PDT)
- AMBER: Segmentation fault (iforrtoccurs during minimization (Amber 9) Eric Shamay (Wed Mar 14 2007 - 18:12:49 PDT)
- Re: AMBER: Segmentation fault (iforrtoccurs during minimization (Amber 9) Carlos Simmerling (Wed Mar 14 2007 - 18:47:23 PDT)
- Re: AMBER: Segmentation fault (iforrtoccurs during minimization (Amber 9) Eric Shamay (Wed Mar 14 2007 - 19:18:55 PDT)
- Re: AMBER: Segmentation fault (iforrtoccurs during minimization (Amber 9) David A. Case (Fri Mar 16 2007 - 13:51:14 PDT)
- Re: AMBER: Segmentation fault (iforrtoccurs during minimization (Amber 9) Carlos Simmerling (Wed Mar 14 2007 - 18:47:23 PDT)
- AMBER: How to build organic compound in Amber Anju Sharma (Wed Mar 14 2007 - 21:24:09 PDT)
- AMBER: hii Anju Sharma (Thu Mar 15 2007 - 02:28:47 PDT)
- Re: AMBER: hii Benjamin Juhl (Thu Mar 15 2007 - 02:44:18 PDT)
- AMBER: Problem related simulation of dimer priya priya (Thu Mar 15 2007 - 04:23:31 PDT)
- Re: AMBER: Problem related simulation of dimer Carlos Simmerling (Thu Mar 15 2007 - 04:38:57 PDT)
- Re: AMBER: Problem related simulation of dimer Abhilash (Thu Mar 15 2007 - 09:03:06 PDT)
- Re: AMBER: Problem related simulation of dimer David A. Case (Thu Mar 15 2007 - 10:09:52 PDT)
- Re: AMBER: Problem related simulation of dimer janavi raghavan (Thu Mar 15 2007 - 10:24:23 PDT)
- Re: AMBER: Problem related simulation of dimer janavi raghavan (Thu Mar 15 2007 - 10:28:32 PDT)
- Re: AMBER: Problem related simulation of dimer Abhilash (Thu Mar 15 2007 - 09:03:06 PDT)
- Re: AMBER: Problem related simulation of dimer Sandeep Kaushik (Fri Mar 16 2007 - 03:32:20 PDT)
- Re: AMBER: Problem related simulation of dimer priya priya (Sun Mar 18 2007 - 22:35:42 PDT)
- Re: AMBER: Problem related simulation of dimer Sandeep Kaushik (Mon Mar 19 2007 - 00:47:49 PDT)
- Re: AMBER: Problem related simulation of dimer priya priya (Mon Mar 19 2007 - 03:38:59 PDT)
- Re: AMBER: Problem related simulation of dimer Sandeep Kaushik (Mon Mar 19 2007 - 04:16:39 PDT)
- Re: AMBER: Problem related simulation of dimer priya priya (Sun Mar 18 2007 - 22:35:42 PDT)
- Re: AMBER: Problem related simulation of dimer Carlos Simmerling (Thu Mar 15 2007 - 04:38:57 PDT)
- AMBER: Dipolar and Inertia Moments kepa koldo burusco (Thu Mar 15 2007 - 04:46:17 PDT)
- AMBER: solvate shell janavi raghavan (Thu Mar 15 2007 - 09:33:13 PDT)
- Re: AMBER: solvate shell Carlos Simmerling (Thu Mar 15 2007 - 09:36:52 PDT)
- Re: AMBER: solvate shell janavi raghavan (Thu Mar 15 2007 - 10:27:42 PDT)
- AMBER: Problem with anisotropic pressure scaling Linda Prengaman (Fri Mar 16 2007 - 07:23:30 PDT)
- RE: AMBER: Problem with anisotropic pressure scaling Akshay Patny (Fri Mar 16 2007 - 09:37:22 PDT)
- Re: AMBER: Problem with anisotropic pressure scaling Robert Duke (Fri Mar 16 2007 - 08:46:58 PDT)
- Re: AMBER: Problem with anisotropic pressure scaling Andy Purkiss-Trew (Fri Mar 16 2007 - 08:47:19 PDT)
- Re: AMBER: Problem with anisotropic pressure scaling David A. Case (Fri Mar 16 2007 - 08:55:51 PDT)
- Re: AMBER: solvate shell David A. Case (Thu Mar 15 2007 - 12:36:04 PDT)
- Re: AMBER: solvate shell Carlos Simmerling (Thu Mar 15 2007 - 09:36:52 PDT)
- AMBER: van der waals parameters. Stefano Tonzani (Thu Mar 15 2007 - 10:52:09 PDT)
- Re: AMBER: van der waals parameters. David A. Case (Thu Mar 15 2007 - 12:30:34 PDT)
- AMBER: Segmentation Fault when saving prmtop and inpcrd files in xleap Laura McDriscoll (Thu Mar 15 2007 - 22:59:33 PDT)
- Re: AMBER: Segmentation Fault when saving prmtop and inpcrd files in xleap David A. Case (Fri Mar 16 2007 - 08:24:16 PDT)
- AMBER: hi Anju Sharma (Fri Mar 16 2007 - 03:50:44 PDT)
- Re: AMBER: hi Carlos Simmerling (Fri Mar 16 2007 - 04:14:15 PDT)
- AMBER: vlimit error Amit Kumar (Fri Mar 16 2007 - 16:10:06 PDT)
- Re: AMBER: vlimit error David A. Case (Mon Mar 19 2007 - 16:11:57 PDT)
- AMBER: antechamber error Ilyas Yildirim (Fri Mar 16 2007 - 23:44:57 PDT)
- AMBER: targeted MD problem gurpreet singh (Sat Mar 17 2007 - 05:17:27 PDT)
- Re: AMBER: targeted MD problem Carlos Simmerling (Sat Mar 17 2007 - 05:27:28 PDT)
- AMBER: MMPBSA with water molecule in active site saurabh agrawal (Sun Mar 18 2007 - 10:25:44 PDT)
- Re: AMBER: MMPBSA with water molecule in active site Carlos Simmerling (Sun Mar 18 2007 - 10:43:44 PDT)
- Re: AMBER: MMPBSA with water molecule in active site saurabh agrawal (Sun Mar 18 2007 - 11:03:21 PDT)
- Re: AMBER: MMPBSA with water molecule in active site Carlos Simmerling (Sun Mar 18 2007 - 11:07:14 PDT)
- Re: AMBER: MMPBSA with water molecule in active site saurabh agrawal (Sun Mar 18 2007 - 11:30:31 PDT)
- Re: AMBER: MMPBSA with water molecule in active site Jiri Sponer (Sun Mar 18 2007 - 11:21:17 PDT)
- Re: AMBER: MMPBSA with water molecule in active site Carlos Simmerling (Sun Mar 18 2007 - 10:43:44 PDT)
- AMBER: targetedMD problem gurpreet singh (Sun Mar 18 2007 - 06:32:40 PDT)
- AMBER: antechamber Ilyas Yildirim (Sun Mar 18 2007 - 10:56:00 PDT)
- Re: AMBER: antechamber David A. Case (Sun Mar 18 2007 - 16:50:00 PDT)
- AMBER: hi Anju Sharma (Sun Mar 18 2007 - 20:56:22 PDT)
- RE: AMBER: hi Ross Walker (Sun Mar 18 2007 - 22:09:56 PDT)
- AMBER: Problem while creating structure in xLeap Anju Sharma (Sun Mar 18 2007 - 21:30:03 PDT)
- Re: AMBER: Problem while creating structure in xLeap Jin-Soo Kim (Sat Mar 24 2007 - 04:53:29 PDT)
- AMBER: Problem!! Anju Sharma (Sun Mar 18 2007 - 23:38:15 PDT)
- RE: AMBER: Problem!! Ross Walker (Mon Mar 19 2007 - 08:23:40 PDT)
- AMBER: MM-GBSA residues decomposition comparison Sergey Samsonov (Tue Mar 20 2007 - 07:17:26 PDT)
- AMBER: basis set for RESP calculation Michel Becker (Tue Mar 20 2007 - 13:43:10 PDT)
- Re: AMBER: basis set for RESP calculation FyD (Wed Mar 21 2007 - 01:03:15 PDT)
- Re: AMBER: basis set for RESP calculation FyD (Wed Mar 21 2007 - 10:17:44 PDT)
- Re: AMBER: basis set for RESP calculation Mark Williamson (Wed Mar 21 2007 - 10:36:40 PDT)
- AMBER: Problem while loading Pdb in xleap Anju Sharma (Tue Mar 20 2007 - 21:12:55 PDT)
- Re: AMBER: Problem while loading Pdb in xleap David A. Case (Tue Mar 20 2007 - 22:31:42 PDT)
- Re: AMBER: Problem while loading Pdb in xleap Sandeep Kaushik (Thu Mar 22 2007 - 03:07:13 PDT)
- AMBER: Problem while running Antechamber Anju Sharma (Wed Mar 21 2007 - 02:35:28 PDT)
- Re:AMBER: Problem while running Antechamber Kateryna Miroshnychenko (Wed Mar 21 2007 - 04:06:15 PDT)
- AMBER: Modified Nucleic Acid Problem SHARAD gupta (Wed Mar 21 2007 - 06:22:10 PDT)
- Re: AMBER: Modified Nucleic Acid Problem FyD (Wed Mar 21 2007 - 07:19:09 PDT)
- Re: AMBER: Modified Nucleic Acid Problem FyD (Wed Mar 21 2007 - 07:20:34 PDT)
- AMBER: How to reimage the trajectories of LES calculations? Kailee (Wed Mar 21 2007 - 06:35:06 PDT)
- Re: AMBER: How to reimage the trajectories of LES calculations? Carlos Simmerling (Wed Mar 21 2007 - 10:04:03 PDT)
- Re: AMBER: How to reimage the trajectories of LES calculations? Kailee (Wed Mar 21 2007 - 10:32:34 PDT)
- Re: AMBER: How to reimage the trajectories of LES calculations? Carlos Simmerling (Wed Mar 21 2007 - 10:04:03 PDT)
- AMBER: ntt=1 or ntt= 3? Therese Malliavin (Wed Mar 21 2007 - 10:32:07 PDT)
- Re: AMBER: ntt=1 or ntt= 3? Carlos Simmerling (Wed Mar 21 2007 - 10:40:20 PDT)
- RE: AMBER: ntt=1 or ntt= 3? Yong Duan (Wed Mar 21 2007 - 11:00:56 PDT)
- Re: AMBER: ntt=1 or ntt= 3? David A. Case (Wed Mar 21 2007 - 12:29:45 PDT)
- RE: AMBER: ntt=1 or ntt= 3? Yong Duan (Thu Mar 22 2007 - 03:42:37 PDT)
- RE: AMBER: ntt=1 or ntt= 3? Hu, Shaowen \(JSC-SK\)[USRA] (Thu Mar 22 2007 - 14:24:10 PDT)
- Re: AMBER: ntt=1 or ntt= 3? Carlos Simmerling (Thu Mar 22 2007 - 14:30:05 PDT)
- RE: AMBER: ntt=1 or ntt= 3? Hu, Shaowen \(JSC-SK\)[USRA] (Thu Mar 22 2007 - 14:40:09 PDT)
- Re: AMBER: ntt=1 or ntt= 3? Carlos Simmerling (Thu Mar 22 2007 - 14:47:26 PDT)
- AMBER: xLeAP: TI calculation: the perturbed charge is not integral Ignacio Faustino (Wed Mar 21 2007 - 12:17:12 PDT)
- Re: AMBER: xLeAP: TI calculation: the perturbed charge is not integral David A. Case (Wed Mar 21 2007 - 12:33:33 PDT)
- AMBER: sander.MPI vs MPICH2 problem!!! Swarup Gupta (Fri Mar 23 2007 - 19:33:44 PDT)
- Re: AMBER: xLeAP: TI calculation: the perturbed charge is not integral David A. Case (Wed Mar 21 2007 - 12:33:33 PDT)
- AMBER: TI calculation: the perturbed charge is not integral Ignacio Faustino (Wed Mar 21 2007 - 12:21:52 PDT)
- AMBER: restraint in minimization deepti nayar (Thu Mar 22 2007 - 01:21:32 PDT)
- Re: AMBER: restraint in minimization Carlos Simmerling (Thu Mar 22 2007 - 04:14:22 PDT)
- Re: AMBER: restraint in minimization Sandeep Kaushik (Mon Mar 26 2007 - 02:21:27 PDT)
- Re: AMBER: restraint in minimization Carlos Simmerling (Mon Mar 26 2007 - 05:19:13 PDT)
- Re: AMBER: restraint in minimization deepti nayar (Mon Mar 26 2007 - 22:10:50 PDT)
- Re: AMBER: restraint in minimization Sandeep Kaushik (Mon Mar 26 2007 - 02:21:27 PDT)
- Re: AMBER: restraint in minimization Carlos Simmerling (Thu Mar 22 2007 - 04:14:22 PDT)
- AMBER: Holding NA Base syn during annealing Seth Lilavivat (Thu Mar 22 2007 - 08:23:20 PDT)
- Re: AMBER: Holding NA Base syn during annealing David A. Case (Thu Mar 22 2007 - 08:41:30 PDT)
- AMBER: Generating structure of polyethylene glycol in AMBER Lili Peng (Thu Mar 22 2007 - 14:35:07 PDT)
- Re: AMBER: Generating structure of polyethylene glycol in AMBER FyD (Thu Mar 22 2007 - 15:11:07 PDT)
- Re: AMBER: Generating structure of polyethylene glycol in AMBER Lili Peng (Thu Mar 22 2007 - 15:17:22 PDT)
- Re: AMBER: Generating structure of polyethylene glycol in AMBER luckyang.gmail.com (Thu Mar 22 2007 - 15:38:02 PDT)
- Re: AMBER: Generating structure of polyethylene glycol in AMBER FyD (Thu Mar 22 2007 - 15:57:55 PDT)
- Re: AMBER: Generating structure of polyethylene glycol in AMBER Lili Peng (Thu Mar 22 2007 - 15:17:22 PDT)
- Re: AMBER: Generating structure of polyethylene glycol in AMBER FyD (Thu Mar 22 2007 - 15:11:07 PDT)
- Re: AMBER: sander/topology problem Jin-Soo Kim (Fri Mar 23 2007 - 07:31:00 PDT)
- Re: AMBER: sander/topology problem Gustavo Seabra (Fri Mar 23 2007 - 08:15:21 PDT)
- Re: AMBER: sander/topology problem Jin-Soo Kim (Sat Mar 24 2007 - 04:17:51 PDT)
- Re: AMBER: sander/topology problem Gustavo Seabra (Fri Mar 23 2007 - 08:15:21 PDT)
- AMBER: anneal algorthm Seth Lilavivat (Fri Mar 23 2007 - 12:33:42 PDT)
- AMBER: Error - must define AMBERHOME environment variable bertrand russell (Fri Mar 23 2007 - 13:05:47 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable Eric Shamay (Fri Mar 23 2007 - 15:26:02 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Sat Mar 24 2007 - 13:18:55 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable Eric Shamay (Sat Mar 24 2007 - 17:32:40 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Sat Mar 24 2007 - 13:18:55 PDT)
- RE: AMBER: Error - must define AMBERHOME environment variable Ross Walker (Sat Mar 24 2007 - 21:06:23 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Mon Mar 26 2007 - 01:56:06 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Mon Mar 26 2007 - 02:03:56 PDT)
- RE: AMBER: Error - must define AMBERHOME environment variable Ross Walker (Mon Mar 26 2007 - 09:31:08 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Mon Mar 26 2007 - 10:10:12 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Mon Mar 26 2007 - 10:12:57 PDT)
- RE: AMBER: Error - must define AMBERHOME environment variable Ross Walker (Mon Mar 26 2007 - 10:56:25 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Mon Mar 26 2007 - 22:57:31 PDT)
- RE: AMBER: Error - must define AMBERHOME environment variable Ross Walker (Tue Mar 27 2007 - 08:31:26 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Tue Mar 27 2007 - 11:39:28 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Tue Mar 27 2007 - 11:42:57 PDT)
- AMBER: SGI Altix Compilation Problems (Was: Error - must define AMBERHOME environment variable) Ross Walker (Tue Mar 27 2007 - 12:14:28 PDT)
- Re: AMBER: SGI Altix Compilation Problems (Was: Error - must define AMBERHOME environment variable) bertrand russell (Tue Mar 27 2007 - 23:36:17 PDT)
- Re: AMBER: SGI Altix Compilation Problems (Was: Error - must define AMBERHOME environment variable) bertrand russell (Thu Mar 29 2007 - 02:04:00 PDT)
- RE: AMBER: SGI Altix Compilation Problems (Was: Error - must define AMBERHOME environment variable) Ross Walker (Thu Mar 29 2007 - 15:43:21 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable bertrand russell (Mon Mar 26 2007 - 01:56:06 PDT)
- Re: AMBER: Error - must define AMBERHOME environment variable Eric Shamay (Fri Mar 23 2007 - 15:26:02 PDT)
- AMBER: Combining RESP with AM1-BCC Ilyas Yildirim (Fri Mar 23 2007 - 14:41:04 PDT)
- Re: AMBER: Combining RESP with AM1-BCC David Mobley (Fri Mar 23 2007 - 16:17:50 PDT)
- Re: AMBER: Combining RESP with AM1-BCC Ilyas Yildirim (Fri Mar 23 2007 - 17:27:07 PDT)
- Re: AMBER: Combining RESP with AM1-BCC FyD (Sat Mar 24 2007 - 02:03:37 PDT)
- Re: AMBER: Combining RESP with AM1-BCC David Mobley (Fri Mar 23 2007 - 16:17:50 PDT)
- AMBER: water density Esther Brugger (Fri Mar 23 2007 - 15:47:33 PDT)
- Re: AMBER: water density Cenk Andac (Fri Mar 23 2007 - 16:13:16 PDT)
- AMBER: amber 9 - output of forces Eric Shamay (Fri Mar 23 2007 - 16:00:39 PDT)
- Re: AMBER: amber 9 - output of forces David A. Case (Fri Mar 23 2007 - 22:10:21 PDT)
- Re: AMBER: amber 9 - output of forces Eric Shamay (Fri Mar 23 2007 - 23:27:41 PDT)
- Re: AMBER: amber 9 - output of forces Eric Shamay (Mon Mar 26 2007 - 15:08:58 PDT)
- Re: AMBER: amber 9 - output of forces Eric Shamay (Tue Mar 27 2007 - 13:36:34 PDT)
- Re: AMBER: amber 9 - output of forces David A. Case (Fri Mar 23 2007 - 22:10:21 PDT)
- AMBER: Does Sander.MPI support coupling effect between different molecules at the same area at the same temperature in the mixture? Jin-Soo Kim (Sat Mar 24 2007 - 04:40:26 PDT)
- AMBER: Please check the total charge and your -nc flag snoze pa (Sun Mar 25 2007 - 21:54:52 PDT)
- Re: AMBER: Please check the total charge and your -nc flag David A. Case (Tue Mar 27 2007 - 15:29:32 PDT)
- AMBER: phe-phe simulation deepti nayar (Mon Mar 26 2007 - 00:25:19 PDT)
- Re: AMBER: phe-phe simulation Carlos Simmerling (Mon Mar 26 2007 - 05:20:52 PDT)
- Re: AMBER: phe-phe simulation deepti nayar (Mon Mar 26 2007 - 22:12:03 PDT)
- Re: AMBER: phe-phe simulation deepti nayar (Tue Mar 27 2007 - 05:48:01 PDT)
- Re: AMBER: phe-phe simulation Carlos Simmerling (Tue Mar 27 2007 - 07:23:15 PDT)
- Re: AMBER: phe-phe simulation deepti nayar (Wed Mar 28 2007 - 04:28:51 PDT)
- Re: AMBER: phe-phe simulation deepti nayar (Mon Mar 26 2007 - 22:12:03 PDT)
- Re: AMBER: phe-phe simulation Carlos Simmerling (Mon Mar 26 2007 - 05:20:52 PDT)
- AMBER: pmemd segmentation fault Vlad Cojocaru (Mon Mar 26 2007 - 02:14:50 PDT)
- Re: AMBER: pmemd segmentation fault Robert Duke (Mon Mar 26 2007 - 06:25:36 PDT)
- Re: AMBER: pmemd segmentation fault Vlad Cojocaru (Mon Mar 26 2007 - 07:29:12 PDT)
- Re: AMBER: pmemd segmentation fault Robert Duke (Mon Mar 26 2007 - 08:26:22 PDT)
- Re: AMBER: pmemd segmentation fault Vlad Cojocaru (Mon Mar 26 2007 - 09:43:52 PDT)
- Re: AMBER: pmemd segmentation fault Robert Duke (Mon Mar 26 2007 - 10:16:08 PDT)
- RE: AMBER: pmemd segmentation fault Ross Walker (Mon Mar 26 2007 - 10:46:48 PDT)
- Re: AMBER: pmemd segmentation fault Vlad Cojocaru (Tue Mar 27 2007 - 05:25:26 PDT)
- Re: AMBER: pmemd segmentation fault Vlad Cojocaru (Mon Mar 26 2007 - 07:29:12 PDT)
- Re: AMBER: pmemd segmentation fault Robert Duke (Mon Mar 26 2007 - 06:25:36 PDT)
- AMBER: pdb file produced by vmd Rita Cassia (Mon Mar 26 2007 - 09:04:19 PDT)
- AMBER: DNA Flat Angle Restraints Kyle L. Brown (Mon Mar 26 2007 - 10:04:09 PDT)
- AMBER: distcovar in ptraj Zhenyu Lu (Mon Mar 26 2007 - 21:00:13 PDT)
- AMBER: Parameter file for Dipeptide Neelanjana Sengupta (Mon Mar 26 2007 - 22:23:32 PDT)
- Re: AMBER: Parameter file for Dipeptide Carlos Simmerling (Tue Mar 27 2007 - 07:20:55 PDT)
- AMBER: The ring number exceeds MAXRING, increase MAXRING and recompile the programs, exit j j (Tue Mar 27 2007 - 07:04:48 PDT)
- Re: AMBER: The ring number exceeds MAXRING, increase MAXRING and recompile the programs, exit j j (Tue Mar 27 2007 - 11:43:49 PDT)
- AMBER: Question about loadMol2 David LeBard (Tue Mar 27 2007 - 11:31:56 PDT)
- Re: AMBER: Question about loadMol2 Scott Brozell (Tue Mar 27 2007 - 12:49:25 PDT)
- Re: AMBER: Question about loadMol2 David Mobley (Tue Mar 27 2007 - 13:15:26 PDT)
- Re: AMBER: Question about loadMol2 Thomas Steinbrecher (Tue Mar 27 2007 - 13:24:55 PDT)
- Re: AMBER: Question about loadMol2 David LeBard (Tue Mar 27 2007 - 13:49:10 PDT)
- Re: AMBER: Question about loadMol2 Scott Brozell (Tue Mar 27 2007 - 15:11:02 PDT)
- Re: AMBER: Question about loadMol2 David LeBard (Tue Mar 27 2007 - 15:53:21 PDT)
- AMBER: Minimization Sophie Barbe (Wed Mar 28 2007 - 01:36:35 PDT)
- Re: AMBER: Minimization Jerome.GOLEBIOWSKI.unice.fr (Wed Mar 28 2007 - 01:48:35 PDT)
- Re: AMBER: Minimization Sophie Barbe (Wed Mar 28 2007 - 02:27:27 PDT)
- Re: AMBER: Question about loadMol2 Thomas Steinbrecher (Tue Mar 27 2007 - 13:24:55 PDT)
- AMBER: amber 9 install: patch reject Stern, Julie (Tue Mar 27 2007 - 11:50:33 PDT)
- AMBER: amber 9: fortran/test failures Stern, Julie (Tue Mar 27 2007 - 11:55:43 PDT)
- Re: AMBER: amber 9: fortran/test failures David A. Case (Tue Mar 27 2007 - 15:15:50 PDT)
- AMBER: residue types for GLY/high pH Stern, Julie (Tue Mar 27 2007 - 13:19:47 PDT)
- AMBER: Amber 9 TI Details Lachele Foley (Lists) (Tue Mar 27 2007 - 14:03:20 PDT)
- Re: AMBER: Amber 9 TI Details Thomas Steinbrecher (Tue Mar 27 2007 - 14:58:55 PDT)
- Re: AMBER: Amber 9 TI Details David A. Case (Tue Mar 27 2007 - 15:23:34 PDT)
- AMBER: specifying psi and phi for a dipeptide deepti nayar (Wed Mar 28 2007 - 04:50:28 PDT)
- AMBER: DISAVE value1 Kyle L. Brown (Wed Mar 28 2007 - 14:42:16 PDT)
- Re: AMBER: DISAVE value1 David A. Case (Fri Mar 30 2007 - 08:24:27 PDT)
- AMBER: rms and rmsf in ptraj Mingfeng Yang (Wed Mar 28 2007 - 14:06:02 PDT)
- Re: AMBER: rms and rmsf in ptraj Thomas Cheatham (Wed Mar 28 2007 - 17:01:13 PDT)
- Re: AMBER: rms and rmsf in ptraj Scott Brozell (Thu Mar 29 2007 - 08:57:43 PDT)
- Re: AMBER: rms and rmsf in ptraj Thomas Cheatham (Wed Mar 28 2007 - 17:01:13 PDT)
- AMBER: problem in implcit simulation gurpreet singh (Wed Mar 28 2007 - 21:25:53 PDT)
- RE: AMBER: problem in implcit simulation Ross Walker (Wed Mar 28 2007 - 22:02:28 PDT)
- AMBER: benchmarking pmemd and sander (pmemd segmentation fault problem follow up) Vlad Cojocaru (Thu Mar 29 2007 - 02:50:29 PDT)
- Re: AMBER: benchmarking pmemd and sander (pmemd segmentation fault problem follow up) Robert Duke (Thu Mar 29 2007 - 06:57:26 PDT)
- Re: AMBER: benchmarking pmemd and sander (pmemd segmentation fault problem follow up) Vlad Cojocaru (Thu Mar 29 2007 - 08:25:59 PDT)
- Re: AMBER: benchmarking pmemd and sander (pmemd segmentation fault problem follow up) Robert Duke (Thu Mar 29 2007 - 08:53:56 PDT)
- Re: AMBER: benchmarking pmemd and sander (pmemd segmentation fault problem follow up) Vlad Cojocaru (Thu Mar 29 2007 - 08:25:59 PDT)
- Re: AMBER: benchmarking pmemd and sander (pmemd segmentation fault problem follow up) Robert Duke (Thu Mar 29 2007 - 06:57:26 PDT)
- AMBER: minimization not running deepti nayar (Thu Mar 29 2007 - 02:57:15 PDT)
- Re: AMBER: minimization not running Vlad Cojocaru (Thu Mar 29 2007 - 03:15:36 PDT)
- Re: AMBER: minimization not running deepti nayar (Thu Mar 29 2007 - 03:51:26 PDT)
- Re: AMBER: minimization not running Vlad Cojocaru (Thu Mar 29 2007 - 03:15:36 PDT)
- AMBER: minimization energy query deepti nayar (Thu Mar 29 2007 - 03:55:39 PDT)
- Re: AMBER: minimization energy query Vlad Cojocaru (Thu Mar 29 2007 - 04:00:02 PDT)
- Re: AMBER: minimization energy query deepti nayar (Thu Mar 29 2007 - 04:35:45 PDT)
- Re: AMBER: minimization energy query deepti nayar (Fri Mar 30 2007 - 00:50:56 PDT)
- Re: AMBER: minimization energy query Vlad Cojocaru (Fri Mar 30 2007 - 01:28:03 PDT)
- Re: AMBER: minimization energy query deepti nayar (Fri Mar 30 2007 - 02:03:24 PDT)
- AMBER: PDB file with charge and size in mm_pbsa calculations Wang, Xuelin (Fri Mar 30 2007 - 08:13:58 PDT)
- Re: AMBER: minimization energy query deepti nayar (Thu Mar 29 2007 - 04:35:45 PDT)
- Re: AMBER: minimization energy query Vlad Cojocaru (Thu Mar 29 2007 - 04:00:02 PDT)
- AMBER: is possible to compile pmemd using scali MPI? Andrea Bortolato (Thu Mar 29 2007 - 09:17:05 PDT)
- Re: AMBER: is possible to compile pmemd using scali MPI? Robert Duke (Thu Mar 29 2007 - 09:36:01 PDT)
- Re: AMBER: is possible to compile pmemd using scali MPI? Andrea Bortolato (Fri Mar 30 2007 - 12:48:12 PDT)
- Re: AMBER: is possible to compile pmemd using scali MPI? Gustavo Seabra (Fri Mar 30 2007 - 13:21:39 PDT)
- Re: AMBER: is possible to compile pmemd using scali MPI? Andrea Bortolato (Fri Mar 30 2007 - 12:48:12 PDT)
- Re: AMBER: is possible to compile pmemd using scali MPI? Robert Duke (Thu Mar 29 2007 - 09:36:01 PDT)
- AMBER: Amber9 Sander Error A Box (Thu Mar 29 2007 - 19:26:21 PDT)
- Re: AMBER: Amber9 Sander Error David A. Case (Fri Mar 30 2007 - 07:04:40 PDT)
- AMBER: Sander error : Coordinate resetting (SHAKE) cannot be accomplished Pankaj R. Daga (Thu Mar 29 2007 - 20:59:08 PDT)
- RE: AMBER: Sander error : Coordinate resetting (SHAKE) cannot be accomplished Ross Walker (Thu Mar 29 2007 - 21:33:37 PDT)
- AMBER: minimization + simulation deepti nayar (Fri Mar 30 2007 - 00:54:03 PDT)
- Re: AMBER: minimization + simulation Vlad Cojocaru (Fri Mar 30 2007 - 01:19:55 PDT)
- AMBER: RST can not be opened deepti nayar (Fri Mar 30 2007 - 02:21:58 PDT)
- Re: AMBER: RST can not be opened Vlad Cojocaru (Fri Mar 30 2007 - 02:45:55 PDT)
- RE: AMBER: RST can not be opened Ross Walker (Fri Mar 30 2007 - 08:42:45 PDT)
- AMBER: mm_pbsa error Wang, Xuelin (Fri Mar 30 2007 - 09:21:50 PDT)
- AMBER: problem regarding water handling in explicit simu gurpreet singh (Fri Mar 30 2007 - 02:35:49 PDT)
- AMBER: Fwd: problem regarding water handling in explicit simu gurpreet singh (Fri Mar 30 2007 - 02:36:52 PDT)
- Re: AMBER: problem regarding water handling in explicit simu Mingfeng Yang (Fri Mar 30 2007 - 12:50:00 PDT)
- AMBER: Some problems during the testing of Amber. Liang, Lei (Fri Mar 30 2007 - 11:12:50 PDT)
- Re: AMBER: Some problems during the testing of Amber. David A. Case (Sat Mar 31 2007 - 21:13:38 PDT)
- AMBER: A question about biomineral simulation, help!! WANG,YING (Fri Mar 30 2007 - 14:36:02 PDT)
- AMBER: Distance restraint to centre of mass Evan Kelly (Fri Mar 30 2007 - 15:41:32 PDT)
- Re: AMBER: Distance restraint to centre of mass David A. Case (Sat Mar 31 2007 - 21:13:48 PDT)
- Last message date: Sun Apr 01 2007 - 06:08:06 PDT
- Archived on: Mon Jan 05 2009 - 06:10:48 PST
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