From: Anju Sharma <>
Date: Fri, 16 Mar 2007 16:20:44 +0530

Hi everybody,

Aftr running MD for my DNA seq in vacuo nw m analysing the results. when m
runing ptraj files m getting follwing warnings:

PTRAJ: Processing input file...
       Input is from standard input

PTRAJ: trajin polyAT_gb_md1_12Acut.mdcrd
Checking coordinates: polyAT_gb_md1_12Acut.mdcrd

Could not open file (polyAT_gb_md1_12Acut.mdcrd) with mode (r)
WARNING in checkCoordinates(): Could not open file
WARNING in ptrajSetupIO(): trajin polyAT_gb_md1_12Acut.mdcrd, cannot open

PTRAJ: rms first mass out polyAT_gb_md1_12Acut.rms time 0.1
Mask [*] represents 638 atoms
WARNING in ptraj(): No input trajectories specified (trajin), aborting...
[root.amber polyAT_gb_md1_12Acut]#

Is dere smthng wrong? or run is successful, m nt able to interpret above
lines. please help in dis....
Anju Sharma
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Received on Sun Mar 18 2007 - 06:07:29 PDT
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