it means it cannot open your trajectory file, check to make sure you
gave the correct name.
On 3/16/07, Anju Sharma <anju.020384.gmail.com> wrote:
>
> Hi everybody,
>
> Aftr running MD for my DNA seq in vacuo nw m analysing the results. when m
> runing ptraj files m getting follwing warnings:
>
> PTRAJ: Processing input file...
> Input is from standard input
>
> PTRAJ: trajin polyAT_gb_md1_12Acut.mdcrd
> Checking coordinates: polyAT_gb_md1_12Acut.mdcrd
>
> Could not open file (polyAT_gb_md1_12Acut.mdcrd) with mode (r)
> WARNING in checkCoordinates(): Could not open file
> (polyAT_gb_md1_12Acut.mdcrd)
> WARNING in ptrajSetupIO(): trajin polyAT_gb_md1_12Acut.mdcrd, cannot open
> file...
>
> PTRAJ: rms first mass out polyAT_gb_md1_12Acut.rms time 0.1
> Mask [*] represents 638 atoms
> WARNING in ptraj(): No input trajectories specified (trajin), aborting...
> [root.amber polyAT_gb_md1_12Acut]#
>
> Is dere smthng wrong? or run is successful, m nt able to interpret above
> lines. please help in dis....
> --
> Anju Sharma
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Received on Sun Mar 18 2007 - 06:07:29 PDT
