RE: AMBER: hi..

From: Rafi Ahmad <Rafi.Ahmad.fagmed.uit.no>
Date: Tue, 13 Mar 2007 13:32:18 +0100

In linux/unix you can go do by using vi command and editing the file or
just use some text editor available both in windows and unix.

 

I suggest you check out some linux man pages.

 

Rafi

 

________________________________

From: owner-amber.scripps.edu [mailto:owner-amber.scripps.edu] On Behalf
Of Anju Sharma
Sent: 13. mars 2007 13:28
To: amber.scripps.edu
Subject: Re: AMBER: hi..

 

i am running tutorial "Simulating DNA......" in this i hd created nuc.in
file thn thn created nuc.out and nuc.pdb files . Now i have to introduce
TER cards in pdb file, so for this i hc to open my pdb file. So problem
is how to open or edit pdb file

On 3/13/07, Carlos Simmerling <carlos.simmerling.gmail.com > wrote:

you need to tell us clearly what you want to do.
do you mean you don't have a file editing program, or that
you don't have a pdb file, or you don't know why you need TER lines,
or you have multiple pdb files and don't know which one to use?

On 3/13/07, Anju Sharma < anju.020384.gmail.com
<mailto:anju.020384.gmail.com> > wrote:
>
> where should i put TER. I mean which file. where to open my pdb file
for
> editing
>
> Anju Sharma
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-- 
Anju Sharma 
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Received on Wed Mar 14 2007 - 06:07:26 PDT
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