Re: AMBER: DNA Helicoïdal Plots over time

From: Vitor Felix <>
Date: Mon, 12 Mar 2007 12:51:12 +0000

Ve este site, talvez valha a pena

Stéphane Téletchéa wrote:
> Dear colleagues,
> I've put on my web site a little tutorial and some programs to plot
> DNA parameters over time. The full description is available at :
> I've tried to explain the whole process, but basically the main tool
> ( uses pre-filtered data extracted from individual Curves
> analysis for getting a full plot over time for the defined parameter.
> For instance, you'll easily get 23 pages of parameters using this
> procedure (namely alpha, beta, gamma, delta, ... but also intra and
> inter base paris parameters). The final plots are generated with
> XmGrace so it is easy to used in an interactive mode after the first
> shot to tweak parameters to your convenience.
> The script is written in perl and can be adjusted to get more
> parameters (most of the time, it is just as easy as adding a
> description in one list).
> This setup has been successfully used for more than 4 years by me and
> some colleagues so i tried to place a clear description of the working
> procedure on the web page for others to benefit from this work.
> Feel free to ask if you need further input, and try to look inside the
> scripts (as recommended on the web page) in case you'll have some
> doubts about parameters.
> Hoping this will help you analyse faster your DNA trajectories,
> Stéphane Téletchéa

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Received on Wed Mar 14 2007 - 06:07:15 PDT
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