I suggest working through the Amber tutorials if you are new to it.
One of the tutorials explicitly covers non-standard residues.
These are accessible from the amber web page.
On 3/27/07, Neelanjana Sengupta <senguptan.gmail.com> wrote:
> Hello AMBER experts,
>
> I am completely new to AMBER. I need to obtain AMBER paramters for Amino
> isobutyric acid (AIB) dipeptide, for which I have a CHARMM type pdb file.
> Could someone please give me pointer son how to proceed?
>
> Thanks,
> --
> ****************************************
> Neelanjana Sengupta, PhD student
> Dept. of Chemistry
> Univ. of California-Irvine
> Irvine, CA 92697
> USA
> Phone: 1-949-824 9921
> email: sengupta.uci.edu
> ****************************************
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Received on Wed Mar 28 2007 - 06:07:40 PDT
