AMBER: Restraints on modified NA's

From: Seth Lilavivat <>
Date: Fri, 02 Mar 2007 16:56:07 -0500

Dear Amber Community,

I am attempting to run some explicitly solvated MD runs on modified NA's with
restraints such as NOE distance and WC distance. I have two questions:

1. I would like to apply the restaints at the very beginning of the MD run, so
what pdb file would I have to give makeDIST_RST?

2. Would I have to modify map.DG-AMBER for my custom residues?


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Received on Sun Mar 04 2007 - 06:08:01 PST
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