Just to be sure, when you untarred the compressed amber.tgz from the cd,
where did you put it? The AMBERHOME should point to the location of the
amber9 source tree. In my case I did the following:
> tar -zxf amber9.tgz
> cp -r amber9 /usr/local/
Then I set:
export AMBERHOME=/usr/local/amber9
in my .bashrc
when you change to the $AMBERHOME directory, i.e.
> cd $AMBERHOME
does that put you in the base directory?
On 3/23/07, bertrand russell <betrussell23.gmail.com> wrote:
>
> Dear Amber9 users,
>
> I am trying to compile amber9 in my HP-work station xw4200 running in
> FC3.I hope that I following all the instructions properly during my
> installation procedure. But, if run
>
> > make test.serial I am getting the following error.
>
>
> ##########################################################################################################################################
>
> ptraj: test ptraj on averaging les trajectory to normal trajectory
> diffing hef_averaged.crd.save with hef_averaged.crd
> PASSED
> ==============================================================
> cd leap; ./Run.tleap
> Error - must define AMBERHOME environment variable
> make: *** [ test.leap] Error 1
> [root.electron test]#
>
>
> ##########################################################################################################################################
>
> But I am sure that I set the AMBERHOME environment variable corrrectly.
> When I issue
>
>
>
> ##########################################################################################################################################
> ptraj: test ptraj on averaging les trajectory to normal trajectory
> diffing hef_averaged.crd.save with hef_averaged.crd
> PASSED
> ==============================================================
> cd leap; ./Run.tleap
> Error - must define AMBERHOME environment variable
> make: *** [test.leap ] Error 1
> [root.electron test]# echo $AMBERHOME
> /usr/local/insprogrms/amber/amber9
> [root.electron test]#
> ##########################################################################################################################################
>
>
> My path is as follows,
>
>
> ##########################################################################################################################################
>
> ptraj: test ptraj on averaging les trajectory to normal trajectory
> diffing hef_averaged.crd.save with hef_averaged.crd
> PASSED
> ==============================================================
> cd leap; ./Run.tleap
> Error - must define AMBERHOME environment variable
> make: *** [ test.leap] Error 1
> [root.electron test]# echo $AMBERHOME
> /usr/local/insprogrms/amber/amber9
> [root.electron test]# echo $PATH
> /usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/X11R6/bin:/root/bin:/usr/local/insprogrms/amber/amber9/exe
>
>
>
> ##########################################################################################################################################
>
> I don't know what I am doing wrong? Could anyone tell me, why I am getting
> this error even when I have exported the AMBERHOME variable correctly. I am
> compiling with g95 and I couldn't notice any error while compiling or while
> making.
> Many thanks in advance.
>
> --
> Live Life; Don't pass it
> Bertrand.P.S.Russell
> +91-9894398441
--
~E
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Received on Sun Mar 25 2007 - 06:08:04 PDT
