David,
I re-compiled amber in parallel and now the make test.parallel
runs to completion. I still get an error when I run the script
that I sent earlier in parallel mode, although it runs fine
in serial mode on the same computer. But the errors now indicate
that I don't have things set properly, as you suggested, so I'll
go back and look more carefully at your suggestions.
FYI, the errors I now get are shown below.
Thanks for all your help.
Mike
###################################################
***** Processor 1
***** System must be very inhomogeneous.
***** Readjusting recip sizes.
In this slab, Atoms found: 20831 Allocated: 15044
mpirun noticed that job rank 0 with PID 7186 on node "localhost" exited on signal 15.
1 additional process aborted (not shown)
| New format PARM file being parsed.
| Version = 1.000 Date = 01/16/07 Time = 16:30:10
###################################################
--
*********************************
Michael F. Summers
Department of Chemistry and Biochemistry
and Howard Hughes Medical Institute
University of Maryland Baltimore County
1000 Hilltop Circle
Baltimore, MD 21250
Phone: (410)-455-2527
FAX: (410)-455-1174
Email: summers.hhmi.umbc.edu
Web: www.hhmi.umbc.edu
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Received on Sun Mar 04 2007 - 06:08:08 PST
