Re: AMBER: how to modify map.DG-AMBER file?

From: David A. Case <case.scripps.edu>
Date: Tue, 6 Mar 2007 17:06:57 -0800

On Tue, Mar 06, 2007, Seth Lilavivat wrote:
>
> RESIDUE DX5
> MAPPING H8 = H8
> MAPPING H1' = H1'
> MAPPING H2' = H2'1
> MAPPING H2'1 = H2'1
> MAPPING HO'2 = HO'2
> MAPPING H3' = H3'
> MAPPING H4' = H4'
> MAPPING H5' = H5'1
> MAPPING H5'1 = H5'1
> MAPPING H5'' = H5'2
> MAPPING H5'2 = H5'2
> MAPPING Q5' = H5'1 H5'2
> MAPPING O6 = O6
> MAPPING H1 = H1
> MAPPING N1 = N1
> MAPPING N2 = N2
> MAPPING 032 = O32
>
> When I run makeDIST_RST I get the following error:
>
> Using MAP file /home/seth/amberfiles/map.DG-AMBER
> ERROR no map function for O32 DX5

I don't see any obvious error. Do other atoms in the DX5 residue get
recognized? You may have to play around with the file, and/or actually look
at the code.

...dac

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Received on Wed Mar 07 2007 - 06:07:47 PST
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