Re: AMBER: poor performance of sander on a quad-core linux machine

From: David A. Case <case.scripps.edu>
Date: Tue, 13 Mar 2007 10:42:48 -0700

On Tue, Mar 13, 2007, Lillian chong wrote:

> I have no problems running two independent simulations at the
> same time using sander classic...

Others may have comments about quad core machines, but I wonder what you mean
by "sander classic"? You mention amber 9, so it's certainly worth trying
out pmemd rather than sander, unless there is some reason you can't use the
former.

...regards...dac

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Received on Wed Mar 14 2007 - 06:07:29 PDT
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