Amber Archive Apr 2004: by date

Thursday, 1 April 2004
- AMBER: Question on Amber7... Pmartin
- Re: AMBER: Question on Amber7... David A. Case
- AMBER: Mac OSX xleap compilation Sergio Pantano
- Re: AMBER: Mac OSX xleap compilation Mengjuei Hsieh
Friday, 2 April 2004
- AMBER: PERT.charge problem in xleap Helios Chen
- AMBER: Alignment tensor for Sander RDCs tim
- Re: AMBER: Alignment tensor for Sander RDCs David A. Case
- AMBER: Parameters for ions? nie beining
- AMBER: installing amber8 on a dual processor single box Carsten Detering
- Re: AMBER: installing amber8 on a dual processor single box Robert Duke
- Re: AMBER: Mac OSX xleap compilation Yusuf Abdulghani
- Re: AMBER: installing amber8 on a dual processor single box David A. Case
- Re: AMBER: Mac OSX xleap compilation Mengjuei Hsieh
- AMBER: Intel fortran compiler and -static switch in older pmemd releases Robert Duke
- Re: AMBER: Intel fortran compiler and -static switch in older pmemd releases David E. Konerding DSD Staff
- Re: AMBER: Intel fortran compiler and -static switch in older pmemd releases Robert Duke
- AMBER: question about image Youyi Peng
- AMBER: AMBER 7 Installation Ilyas Yildirim
- Re: AMBER: question about image Thomas E. Cheatham, III
- AMBER: sander + ew_legal.h Carsten Detering
- Re: AMBER: sander + ew_legal.h David A. Case
- Re: AMBER: AMBER 7 Installation David A. Case
- Re: AMBER: question about image pengyo.UMDNJ.EDU
Saturday, 3 April 2004
- AMBER: question about image - truncated octahedron Chris Moth
Sunday, 4 April 2004
- AMBER: amber8 tutorial Patil, Sachin
- Re: AMBER: amber8 tutorial Viktor Hornak
- RE: AMBER: amber8 tutorial Ross Walker
Monday, 5 April 2004
- AMBER: Error in building a molecule anshul.imtech.res.in
- AMBER: minimization of GLH Hailong Lin
- Re: AMBER: minimization of GLH David A. Case
- Re: AMBER: minimization of GLH Hailong Lin
- AMBER: Antechamber compilation error Arvind
- Re: AMBER: question about image Thomas E. Cheatham, III
- Re: AMBER: minimization of GLH David A. Case
- Re: AMBER: Antechamber compilation error David A. Case
- AMBER: PMEMD Problems... Jon Gray
- AMBER: antechamber: frcmod parameter need revision atchara.mercury.hec.utah.edu
- Re: AMBER: PMEMD Problems... Robert Duke
- Re: AMBER: question about image - truncated octahedron Thomas E. Cheatham, III
- Re: AMBER: PMEMD Problems... Jon Gray
- Re: AMBER: PMEMD Problems... Robert Duke
Tuesday, 6 April 2004
- AMBER: which parameters for Ca2+ ? cailliez
- AMBER: anshul.imtech.res.in
- AMBER: free energy perturbation Herbert Georg
- Re: AMBER: free energy perturbation David Smith
- RE: AMBER: free energy perturbation Kristina Furse
- Re: AMBER: free energy perturbation Herbert Georg
- AMBER: which atoms are H's for SHAKE? Oliver Hucke
- AMBER: gibbs calculation Carsten Detering
- AMBER: new leap with old gibbs Carsten Detering
- Re: AMBER: which atoms are H's for SHAKE? Bill Ross
- Re: AMBER: new leap with old gibbs David A. Case
- Re: AMBER: Question on Amber7... Pmartin
- Re: AMBER: new leap with old gibbs Carsten Detering
- Re: AMBER: new leap with old gibbs David A. Case
- Re: AMBER: Question on Amber7... David A. Case
- AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? Ilyas Yildirim
- Re: AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? Ilyas Yildirim
- Re: AMBER: free energy perturbation David A. Case
- AMBER: more vlimit exceeded problems... Linda Prengaman
- AMBER: Amber 8 ptraj segmentation fault Sivakolundu, Sivashankar
- AMBER: riccardodesantis.fastwebnet.it
- AMBER: ANAL: how can i buld the anal.in file? riccardodesantis.fastwebnet.it
Wednesday, 7 April 2004
- AMBER: Error message while testing Alessio Comisso
- AMBER: error in antechamber anshul.imtech.res.in
- AMBER: unique atom names anshul.imtech.res.in
- Re: AMBER: error in antechamber Ilyas Yildirim
- RE: AMBER: unique atom names Chris Moth
- AMBER: unique atom names Chris Moth
- AMBER: ptraj parser Thomas C. Bishop
- Re: AMBER: more vlimit exceeded problems... David A. Case
- Re: AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? David A. Case
- Re: AMBER: ANAL: how can i buld the anal.in file? David A. Case
- Re: AMBER: error in antechamber David A. Case
- Re: AMBER: ptraj parser Viktor Hornak
- AMBER: Ti of CH3 -> NH2 Carsten Detering
- AMBER: respgen Ilyas Yildirim
- Re: AMBER: Ti of CH3 -> NH2 David A. Case
- Re: AMBER: respgen David A. Case
- AMBER: bug of leap? Ye Mei
- AMBER: bug of leap? Ye Mei
- Re: AMBER: bug of leap? Ye Mei
- AMBER: Carnal in Amber7 Sichun Yang
Thursday, 8 April 2004
- Re: AMBER: error in antechamber anshul.imtech.res.in
- AMBER: warning about improper dihedral in leap!! Pradipta Bandyopadhyay
- AMBER: Beale, John
- Re: AMBER: Holger Gohlke
- Re: AMBER: error in antechamber David A. Case
- Re: AMBER: warning about improper dihedral in leap!! David A. Case
- Re: AMBER: bug of leap? Chris Moth
- Re: AMBER: Carnal in Amber7 Bill Ross
- AMBER: Gaussian 98 Installation Ilyas Yildirim
- AMBER: Dipole moment changes during MD Jiten
- AMBER: script on tutorial page Ioana Cozmuta
- RE: AMBER: script on tutorial page Ross Walker
Friday, 9 April 2004
- RE: AMBER: Dipole moment changes during MD Ross Walker
- Re: AMBER: Dipole moment changes during MD Jiten
- AMBER: NMODE xiaowei li
- AMBER: Suggestions for newer pentium chips and hyperthreading with PMEMD Robert Duke
- RE: AMBER: Suggestions for newer pentium chips and hyperthreading with PMEMD Ross Walker
- RE: AMBER: Dipole moment changes during MD Ross Walker
- RE: AMBER: script on tutorial page Ioana Cozmuta
- AMBER: equilibration does not start with SHAKE Oliver Hucke
- Re: AMBER: Suggestions for newer pentium chips and hyperthreading with PMEMD David E. Konerding DSD Staff
- Re: AMBER: NMODE David A. Case
- Re: AMBER: equilibration does not start with SHAKE David A. Case
- Re: AMBER: Dipole moment changes during MD Jiten
Saturday, 10 April 2004
- AMBER: amber/pmemd with mpiexec Lubos Vrbka
- Re: AMBER: amber/pmemd with mpiexec Robert Duke
- RE: AMBER: script on tutorial page Thomas E. Cheatham, III
- Returned mail: see transcript for details Mail Delivery Subsystem
Sunday, 11 April 2004
- Re: AMBER: amber/pmemd with mpiexec Lubos Vrbka
Monday, 12 April 2004
- AMBER: Antechamber compilation: leap error Arvind
- AMBER: XLeap: head/tail and frcmod L Jin
- Re: AMBER: Antechamber compilation: leap error Ye Mei
- AMBER: Compiling Amber 8 Beale, John
- Re: AMBER: Compiling Amber 8 Viktor Hornak
- Re: AMBER: Compiling Amber 8 Robert Duke
- Re: AMBER: amber/pmemd with mpiexec Robert Duke
- Re: AMBER: XLeap: head/tail and frcmod David A. Case
- AMBER: Group in sander xiaowei li
- Re: AMBER: Group in sander Viktor Hornak
- Re: AMBER: Group in sander Thomas E. Cheatham, III
- AMBER: Group in sander Chris Moth
- AMBER: scali amber8 Guanglei Cui
- AMBER: ptraj pengyo.UMDNJ.EDU
- Re: AMBER: ptraj Thomas E. Cheatham, III
- Re: AMBER: ptraj pengyo.UMDNJ.EDU
- AMBER: water hole Holly Freedman
- Re: AMBER: water hole Carlos Simmerling
- Re: AMBER: scali amber8 Scott Brozell
- Re: AMBER: water hole David A. Case
- Re: AMBER: water hole Holly Freedman
- Re: AMBER: Error message while testing Scott Brozell
- Re: AMBER: water hole Bill Ross
- AMBER: how to use mm_pbsa_statistics.pl independently Jufang Shan
- AMBER: Re: a new question Viktor Hornak
Tuesday, 13 April 2004
- Re: AMBER: Compiling Amber 8 Andreas Svrcek-Seiler
- Re: AMBER: water hole Andreas Svrcek-Seiler
- AMBER: WHICH LINUX Raj Badhan
- Re: AMBER: WHICH LINUX Marc Baaden
- RE: AMBER: how to use mm_pbsa_statistics.pl independently Chris Moth
- Re: AMBER: WHICH LINUX Andreas Svrcek-Seiler
- Re: AMBER: ptraj ayongye.sunchem.chem.uga.edu
- Re: AMBER: Compiling Amber 8 Bill Ross
- Re: AMBER: how to use mm_pbsa_statistics.pl independently Holger Gohlke
- AMBER: how to check metal ion bonding ? Venkata S Koppuravuri
- Re: AMBER: how to check metal ion bonding ? Oliver Hucke
- Re: AMBER: how to check metal ion bonding ? Bill Ross
- AMBER: Amber 7 on SGI: Sander MPI problem Rohn Wood
- Out of Office AutoReply: Boost your sex life Bernor, Sandie L
- AMBER: Creating Parmtop files for NAMD Edward Patrick Obrien
- Re: AMBER: Amber 7 on SGI: Sander MPI problem David A. Case
- Re: AMBER: Creating Parmtop files for NAMD M. L. Dodson
Wednesday, 14 April 2004
- AMBER: Amber and Linux compilation Raj Badhan
- Re: AMBER: Amber and Linux compilation Ye Mei
- Re: AMBER: Amber and Linux compilation Raj Badhan
- Re: AMBER: Amber 7 on SGI: Sander MPI problem Tru Huynh
- Re: AMBER: non-isotropic pressure scaling Lubos Vrbka
- Re: AMBER: Amber and Linux compilation Raj Badhan
- Re: Re: AMBER: Amber and Linux compilation Ye Mei
- Re: AMBER: Creating Parmtop files for NAMD Thomas C. Bishop
- AMBER: salt concentration cailliez
- Re: Re: AMBER: Amber and Linux compilation Raj Badhan
- Re: AMBER: salt concentration tim
- Re: Re: AMBER: Amber and Linux compilation Andreas Svrcek-Seiler
- Re: Re: AMBER: Amber and Linux compilation Teletchéa Stéphane
- Re: AMBER: non-isotropic pressure scaling David A. Case
- Re: AMBER: non-isotropic pressure scaling Lubos Vrbka
- Re: AMBER: non-isotropic pressure scaling David A. Case
- Re: AMBER: Amber 7 on SGI: Sander MPI problem Rohn Wood
- AMBER: atomicfluct in ptraj Qiang Lu
- AMBER: Time to minimize the energy by NMODE xiaowei li
- Re: AMBER: atomicfluct in ptraj Holger Gohlke
- AMBER: gibbs termination Carsten Detering
- Re: AMBER: non-isotropic pressure scaling Lubos Vrbka
- Re: AMBER: Time to minimize the energy by NMODE Holger Gohlke
- Re: AMBER: gibbs termination Bill Ross
- Re[2]: AMBER: atomicfluct in ptraj Qiang Lu
- AMBER: xleap bug? Carsten Detering
- RE: AMBER: xleap bug? Ross Walker
- Re: AMBER: Time to minimize the energy by NMODE David A. Case
- Re: AMBER: Amber 7 on SGI: Sander MPI problem Rohn Wood
- Re: AMBER: water hole Amber Administration
- Re: AMBER: water hole Holly Freedman
- Re: AMBER: gibbs termination David A. Case
- AMBER: Problem in loading a PDB file in Leap - Please help me Mike
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me tim
Thursday, 15 April 2004
- AMBER: ptraj-6.5 cailliez
- AMBER: pbsa Chenglong Li
- Re: AMBER: pbsa rluo.uci.edu
- Re: AMBER: water hole Bill Ross
Friday, 16 April 2004
- AMBER: distance measurement in carnal and ptraj anshul.imtech.res.in
- AMBER: new atom and increase the number of bonds Tomas Hrobarik
- Re: AMBER: distance measurement in carnal and ptraj David A. Case
- Re: AMBER: distance measurement in carnal and ptraj Bill Ross
- AMBER: compiling Amber 8 Beale, John
- RE: AMBER: compiling Amber 8 Ross Walker
- RE: AMBER: compiling Amber 8 Bill Ross
- RE: AMBER: compiling Amber 8 Bill Ross
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me Mike
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me Bill Ross
Saturday, 17 April 2004
- AMBER: free energy perturbation questions hj zou
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me Mike
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me Bill Ross
Sunday, 18 April 2004
- AMBER: loading PDB problem in leap Suwipa saen-oon
- Re: AMBER: non-isotropic pressure scaling Robert Duke
- Re: AMBER: loading PDB problem in leap Jiten
Monday, 19 April 2004
- AMBER: xleap console message Guanglei Cui
- AMBER: Intel Fortran Compiler, 7.1 status Robert Duke
- Re: AMBER: xleap console message David A. Case
- Re: AMBER: xleap console message Guanglei Cui
- Re: AMBER: xleap console message Bill Ross
- AMBER: ptraj projections help Thomas C. Bishop
- AMBER: memory problem in NMODE xhu1.memphis.edu
- AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim
- Re: AMBER: xleap console message Guanglei Cui
- Re: AMBER: xleap console message Bill Ross
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? David A. Case
- Re: AMBER: memory problem in NMODE David A. Case
- Re: AMBER: memory problem in NMODE xhu1.memphis.edu
- Re: AMBER: memory problem in NMODE David A. Case
Tuesday, 20 April 2004
- AMBER: nucgen generated RNA duplex: leap problems Arvind
- AMBER: Simulation of lipid bilayers Greg Jezierski
- Re: AMBER: nucgen generated RNA duplex: leap problems Skauge Tormod
- AMBER: "No radius found for F" error and vdw radii for F in MMPBSA Ming Lei
- AMBER: instalation of amber7 on SUN anshul.imtech.res.in
- Re: AMBER: instalation of amber7 on SUN David A. Case
- Re: AMBER: nucgen generated RNA duplex: leap problems David A. Case
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? David A. Case
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? David A. Case
- AMBER: Using pbsa Thomas Steinbrecher
- Re: AMBER: Using pbsa Chenglong Li
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? Ilyas Yildirim
- Re: AMBER: Using pbsa David A. Case
Wednesday, 21 April 2004
- AMBER: distance dependent dielectric anshul.imtech.res.in
- AMBER: Question about compiling PMEMD Tod Pascal
- AMBER: Turning off non-bond interactions david.evans.ulsop.ac.uk
- AMBER: How to solve these warnings? Xiao He
- AMBER: Why are there LENNARD_JONES_COEF A,B zero Xiao He
- Re: AMBER: How to solve these warnings? Jiten
- Re: AMBER: distance dependent dielectric Viktor Hornak
- Re: AMBER: Question about compiling PMEMD Robert Duke
- Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Dr. Yong Duan
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Xiao He
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Jiten
- Re: Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Xiao He
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Dr. Yong Duan
- RE: AMBER: Turning off non-bond interactions Chris Moth
- RE: AMBER: Turning off non-bond interactions Chris Moth
- Re: AMBER: Turning off non-bond interactions David A. Case
- AMBER: non-periodic simulation and box information !! Pradipta Bandyopadhyay
- Re: Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero Dr. Yong Duan
- Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero David A. Case
- AMBER: rdparm: a parameter array overflowed Wen Li
- RE: AMBER: Turning off non-bond interactions david.evans.ulsop.ac.uk
- Re: AMBER: non-periodic simulation and box information !! Robert Duke
- Re: AMBER: Turning off non-bond interactions Robert Duke
- Re: AMBER: rdparm: a parameter array overflowed David A. Case
- Re: AMBER: non-periodic simulation and box information !! Michael Crowley
- RE: AMBER: Turning off non-bond interactions Bill Ross
- Re: AMBER: How to solve these warnings? Bill Ross
- Re: AMBER: nucgen generated RNA duplex: leap problems Bill Ross
- Re: AMBER: nucgen generated RNA duplex: leap problems Arvind
- RE: AMBER: How to solve these warnings? Kristina Furse
- AMBER: gaff "ha" atom type Oliver Hucke
- Re: AMBER: nucgen generated RNA duplex: leap problems Bill Ross
- AMBER: restraintmask and ambmask Oliver Hucke
- AMBER: What kind of informations are needed in a .pdb file in order to start using antechamber? Ilyas Yildirim
Thursday, 22 April 2004
- Re: AMBER: instalation of amber7 on SUN anshul.imtech.res.in
Wednesday, 21 April 2004
- RE: AMBER: Question about compiling PMEMD Tod Pascal
Thursday, 22 April 2004
- AMBER: Bond type in leap anshul.imtech.res.in
- AMBER: mm_pbsa examples; delphi in mm_pbsa Kazuo Koyano
- Re: AMBER: Question about compiling PMEMD Robert Duke
- RE: AMBER: What kind of informations are needed in a .pdb file in order to start using antechamber? Chris Moth
- AMBER: antechamber bcctype.c typo Chris Moth
- Re: AMBER: Question about compiling PMEMD Robert Duke
- Re: AMBER: restraintmask and ambmask Viktor Hornak
- AMBER: Euclidean distances Wen Li
- Re: AMBER: Euclidean distances Bill Ross
- Re: AMBER: Bond type in leap Bill Ross
- AMBER: MD for protein-carbohydrate complex Mikyung Seo
- Re: AMBER: MD for protein-carbohydrate complex Bill Ross
- AMBER: protein-carbohydrate complex Mikyung Seo
- Re: AMBER: protein-carbohydrate complex Bill Ross
Friday, 23 April 2004
- AMBER: solvateCap warning Helios Chen
- Re: AMBER: solvateCap warning Guanglei Cui
- AMBER: partition error in shake Guanglei Cui
- AMBER: pmemd and mpich - myrinet Lubos Vrbka
- Re: AMBER: pmemd and mpich - myrinet Robert Duke
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka
- Re: AMBER: solvateCap warning Chenglong Li
- AMBER: Parameters for nonpolar contribution to solvation Thomas Steinbrecher
- Re: AMBER: pmemd and mpich - myrinet Robert Duke
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka
- AMBER: parameters for neutral Arg Mikyung Seo
- Re: AMBER: parameters for neutral Arg Adrian E. Roitberg
- AMBER: compile amber8 in linux with ifort quch quch
- RE: AMBER: compile amber8 in linux with ifort Ross Walker
- RE: AMBER: compile amber8 in linux with ifort Ross Walker
- Re: AMBER: compile amber8 in linux with ifort Viktor Hornak
- RE: AMBER: compile amber8 in linux with ifort quch quch
- AMBER: Antechamber: problems with bcc correction Oliver Hucke
- AMBER: "matrix" in ptraj Sichun Yang
- AMBER: NSNB parameter Helios Chen
Saturday, 24 April 2004
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka
- Re: AMBER: "matrix" in ptraj Holger Gohlke
- Re: AMBER: Parameters for nonpolar contribution to solvation Holger Gohlke
- AMBER: tutorial of Biotin/Streptavidin Helios Chen
- Re: AMBER: NSNB parameter Chris Moth
- Re: AMBER: pmemd and mpich - myrinet Robert Duke
- Re: AMBER: instalation of amber7 on SUN David A. Case
- Re: AMBER: tutorial of Biotin/Streptavidin David A. Case
- Re: AMBER: NSNB parameter Robert Duke
- Re: AMBER: NSNB parameter David A. Case
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka
- AMBER: Optimizing a structure and the interpretation of it Ilyas Yildirim
- Re: AMBER: "matrix" in ptraj Sichun Yang
- Re: AMBER: "matrix" in ptraj Thomas E. Cheatham, III
- Re: AMBER: NSNB parameter Robert Duke
Sunday, 25 April 2004
- Re: AMBER: Antechamber: problems with bcc correction David A. Case
- AMBER: PMEMD scaling Lubos Vrbka
- Re: AMBER: PMEMD scaling Robert Duke
- Re: AMBER: Optimizing a structure and the interpretation of it Kazuo Koyano
Monday, 26 April 2004
- Re: AMBER: mm_pbsa examples; delphi in mm_pbsa Holger Gohlke
- AMBER: overlap between HE and OE in GLH Hailong Lin
- AMBER: neutral residues Mikyung Seo
- Re: AMBER: overlap between HE and OE in GLH tim
- Re: AMBER: neutral residues tim
- RE: AMBER: overlap between HE and OE in GLH Yong Duan
- RE: AMBER: overlap between HE and OE in GLH Yong Duan
- RE: AMBER: neutral residues Yong Duan
- AMBER: PARMSCAN Sergio Emanuel Galembeck
- AMBER: universal recognition of chemicals Ioana Cozmuta
- RE: AMBER: universal recognition of chemicals Ross Walker
Tuesday, 27 April 2004
- AMBER: Titratable amino acid termini Sarah Harris
- Ready and (0nline) amber preview.jpg Date Chatters
- Ready and (0nline) amber preview.jpg Date Chatters
- Re: AMBER: overlap between HE and OE in GLH Hailong Lin
- AMBER: xleap don't recognize formaldehyde? scopio
- Re: AMBER: pmemd and mpich - myrinet Lubos Vrbka
- AMBER: AMBER Gibbs Memory problem Jiten
- AMBER: amber8 performance on linux cluster quch quch
- Re: AMBER: amber8 performance on linux cluster Lubos Vrbka
- RE: AMBER: amber8 performance on linux cluster Yong Duan
- AMBER: PMEMD and ifort 8 update Robert Duke
- AMBER: Additional note on ld.so.conf vs. LD_LIBRARY_PATH Robert Duke
- Re: AMBER: PMEMD and ifort 8 update David A. Case
- Re: AMBER: xleap don't recognize formaldehyde? David A. Case
- Re: AMBER: AMBER Gibbs Memory problem David A. Case
- Re: AMBER: Additional note on ld.so.conf vs. LD_LIBRARY_PATH David E. Konerding DSD Staff
- Re: AMBER: Additional note on ld.so.conf vs. LD_LIBRARY_PATH Robert Duke
- Re: AMBER: partition error in shake Scott Brozell
- Re: AMBER: Titratable amino acid termini John Mongan
- AMBER: %GIBBS-F-MISMATCH, The parm and coord files disagree on the number of atoms Jiten
Wednesday, 28 April 2004
- AMBER: question on simulated annealing Venkata S Koppuravuri
- Re: AMBER: question on simulated annealing David A. Case
- AMBER: questions about NMODE xhu1.memphis.edu
- Re: AMBER: %GIBBS-F-MISMATCH, The parm and coord files disagree on the number of atoms David A. Case
- Re: AMBER: questions about NMODE David A. Case
- Re: AMBER: antechamber bcctype.c typo David A. Case
- Re: AMBER: questions about NMODE xhu1.memphis.edu
- Re: AMBER: questions about NMODE David A. Case
- Re: AMBER: questions about NMODE xhu1.memphis.edu
- Re: AMBER: questions about NMODE David A. Case
- AMBER: a general question about the mmpbsa method a b
- AMBER: mm_pbsa question: MAXAT=10000 exceeded Fang, Jianwen
- Re: AMBER: mm_pbsa question: MAXAT=10000 exceeded Holger Gohlke
Thursday, 29 April 2004
- AMBER: VS: mmpbsa question Olayiwola Adekoya
- AMBER: Redhat install Helios Chen
- Re: AMBER: Redhat install David A. Case
- Re: AMBER: questions about NMODE xhu1.memphis.edu
- Re: AMBER: questions about NMODE David A. Case
- AMBER: CHARMM PSF to PRMTOP Gabbar Daaku
- Re: AMBER: questions about NMODE xhu1.memphis.edu
- Re: AMBER: Redhat install scopio
- Re: AMBER: Redhat install Mengjuei Hsieh
Friday, 30 April 2004
- AMBER: Angle Restraining Pooja Narang
- Re: AMBER: VS: mmpbsa question Holger Gohlke
- AMBER: just sander not run Helios Chen
- AMBER: energy criteria. anshul.imtech.res.in
- Re: AMBER: just sander not run David A. Case
- Re: AMBER: Angle Restraining David A. Case
- Re: AMBER: energy criteria. David A. Case
- AMBER: Amber8 compilation error Arvind
- Re: AMBER: energy criteria. Chris Moth
- Re: AMBER: Amber8 compilation error David A. Case
- Re: AMBER: Amber8 compilation error Bill Ross
- AMBER: esp or resp for all_amino94.lib Mikyung Seo

Last message date: Sat May 01 2004 - 00:53:01 PDT
Archived on: Fri Nov 22 2024 - 05:53:19 PST

Amber Archive Apr 2004 by date