Dear Amber users,
I have a general question about imaging. After MD simulation in PBC, what
kind of problems will be generated if no ptraj/image post-processing? What
difference will be made before and after imaging? I compared RMSD of
trajectory files before and after, and it looks no difference. Does imaging
affect the fitting and averaging of structures? I don't really understand
what imaging does and what kind of effects it will have.
Any comments are appreciated.
Youyi Peng
Graduate Student
Department of Pharmacology
UMDNJ-RWJMS
675 Hoes Lane,
Piscataway, NJ 08854
Phone: (732) 235 0181
Fax: (732) 235 3474
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber.scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo.scripps.edu
Received on Fri Apr 02 2004 - 23:53:00 PST
