Amber Archive Apr 2004: by author

a b
- AMBER: a general question about the mmpbsa method (Wed Apr 28 2004 - 20:51:00 PDT)
Adrian E. Roitberg
- Re: AMBER: parameters for neutral Arg (Fri Apr 23 2004 - 14:05:03 PDT)
Alessio Comisso
- AMBER: Error message while testing (Wed Apr 07 2004 - 04:53:24 PDT)
Amber Administration
- Re: AMBER: water hole (Wed Apr 14 2004 - 16:59:31 PDT)
Andreas Svrcek-Seiler
- Re: Re: AMBER: Amber and Linux compilation (Wed Apr 14 2004 - 07:44:21 PDT)
- Re: AMBER: WHICH LINUX (Tue Apr 13 2004 - 08:30:20 PDT)
- Re: AMBER: water hole (Tue Apr 13 2004 - 03:02:12 PDT)
- Re: AMBER: Compiling Amber 8 (Tue Apr 13 2004 - 02:57:29 PDT)
anshul.imtech.res.in
- AMBER: energy criteria. (Fri Apr 30 2004 - 13:51:04 PDT)
- AMBER: Bond type in leap (Thu Apr 22 2004 - 12:22:31 PDT)
- Re: AMBER: instalation of amber7 on SUN (Thu Apr 22 2004 - 09:35:37 PDT)
- AMBER: distance dependent dielectric (Wed Apr 21 2004 - 08:30:49 PDT)
- AMBER: instalation of amber7 on SUN (Tue Apr 20 2004 - 19:53:20 PDT)
- AMBER: distance measurement in carnal and ptraj (Fri Apr 16 2004 - 13:56:33 PDT)
- Re: AMBER: error in antechamber (Thu Apr 08 2004 - 10:36:57 PDT)
- AMBER: unique atom names (Wed Apr 07 2004 - 16:00:31 PDT)
- AMBER: error in antechamber (Wed Apr 07 2004 - 15:49:47 PDT)
- AMBER: (Tue Apr 06 2004 - 14:58:07 PDT)
- AMBER: Error in building a molecule (Mon Apr 05 2004 - 15:01:54 PDT)
Arvind
- AMBER: Amber8 compilation error (Fri Apr 30 2004 - 10:04:02 PDT)
- Re: AMBER: nucgen generated RNA duplex: leap problems (Wed Apr 21 2004 - 13:23:28 PDT)
- AMBER: nucgen generated RNA duplex: leap problems (Tue Apr 20 2004 - 04:44:37 PDT)
- AMBER: Antechamber compilation: leap error (Mon Apr 12 2004 - 04:05:58 PDT)
- AMBER: Antechamber compilation error (Mon Apr 05 2004 - 09:22:21 PDT)
atchara.mercury.hec.utah.edu
- AMBER: antechamber: frcmod parameter need revision (Mon Apr 05 2004 - 14:11:12 PDT)
ayongye.sunchem.chem.uga.edu
- Re: AMBER: ptraj (Tue Apr 13 2004 - 08:48:54 PDT)
Beale, John
- AMBER: compiling Amber 8 (Fri Apr 16 2004 - 10:23:23 PDT)
- AMBER: Compiling Amber 8 (Mon Apr 12 2004 - 06:44:25 PDT)
- AMBER: (Thu Apr 08 2004 - 06:04:04 PDT)
Bernor, Sandie L
- Out of Office AutoReply: Boost your sex life (Tue Apr 13 2004 - 17:34:52 PDT)
Bill Ross
- Re: AMBER: Amber8 compilation error (Fri Apr 30 2004 - 13:50:28 PDT)
- Re: AMBER: protein-carbohydrate complex (Thu Apr 22 2004 - 15:39:16 PDT)
- Re: AMBER: MD for protein-carbohydrate complex (Thu Apr 22 2004 - 13:03:54 PDT)
- Re: AMBER: Bond type in leap (Thu Apr 22 2004 - 09:53:33 PDT)
- Re: AMBER: Euclidean distances (Thu Apr 22 2004 - 09:34:37 PDT)
- Re: AMBER: nucgen generated RNA duplex: leap problems (Wed Apr 21 2004 - 13:34:40 PDT)
- Re: AMBER: nucgen generated RNA duplex: leap problems (Wed Apr 21 2004 - 11:33:00 PDT)
- Re: AMBER: How to solve these warnings? (Wed Apr 21 2004 - 11:21:30 PDT)
- RE: AMBER: Turning off non-bond interactions (Wed Apr 21 2004 - 11:09:44 PDT)
- Re: AMBER: xleap console message (Mon Apr 19 2004 - 13:58:05 PDT)
- Re: AMBER: xleap console message (Mon Apr 19 2004 - 10:28:17 PDT)
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me (Sat Apr 17 2004 - 12:40:06 PDT)
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me (Fri Apr 16 2004 - 22:55:43 PDT)
- RE: AMBER: compiling Amber 8 (Fri Apr 16 2004 - 12:45:06 PDT)
- RE: AMBER: compiling Amber 8 (Fri Apr 16 2004 - 12:36:44 PDT)
- Re: AMBER: distance measurement in carnal and ptraj (Fri Apr 16 2004 - 11:32:07 PDT)
- Re: AMBER: water hole (Thu Apr 15 2004 - 11:49:02 PDT)
- Re: AMBER: gibbs termination (Wed Apr 14 2004 - 13:16:50 PDT)
- Re: AMBER: how to check metal ion bonding ? (Tue Apr 13 2004 - 14:34:52 PDT)
- Re: AMBER: Compiling Amber 8 (Tue Apr 13 2004 - 09:38:58 PDT)
- Re: AMBER: water hole (Mon Apr 12 2004 - 18:58:47 PDT)
- Re: AMBER: Carnal in Amber7 (Thu Apr 08 2004 - 11:16:02 PDT)
- Re: AMBER: which atoms are H's for SHAKE? (Tue Apr 06 2004 - 13:11:41 PDT)
cailliez
- AMBER: ptraj-6.5 (Thu Apr 15 2004 - 02:42:36 PDT)
- AMBER: salt concentration (Wed Apr 14 2004 - 07:45:44 PDT)
- AMBER: which parameters for Ca2+ ? (Tue Apr 06 2004 - 00:50:03 PDT)
Carlos Simmerling
- Re: AMBER: water hole (Mon Apr 12 2004 - 15:40:13 PDT)
Carsten Detering
- AMBER: xleap bug? (Wed Apr 14 2004 - 15:28:07 PDT)
- AMBER: gibbs termination (Wed Apr 14 2004 - 12:17:29 PDT)
- AMBER: Ti of CH3 -> NH2 (Wed Apr 07 2004 - 15:14:11 PDT)
- Re: AMBER: new leap with old gibbs (Tue Apr 06 2004 - 14:48:26 PDT)
- AMBER: new leap with old gibbs (Tue Apr 06 2004 - 12:16:01 PDT)
- AMBER: gibbs calculation (Tue Apr 06 2004 - 11:11:55 PDT)
- AMBER: sander + ew_legal.h (Fri Apr 02 2004 - 17:08:07 PST)
- AMBER: installing amber8 on a dual processor single box (Fri Apr 02 2004 - 10:37:46 PST)
Chenglong Li
- Re: AMBER: solvateCap warning (Fri Apr 23 2004 - 10:44:14 PDT)
- Re: AMBER: Using pbsa (Tue Apr 20 2004 - 16:47:34 PDT)
- AMBER: pbsa (Thu Apr 15 2004 - 10:26:51 PDT)
Chris Moth
- Re: AMBER: energy criteria. (Fri Apr 30 2004 - 11:03:39 PDT)
- Re: AMBER: NSNB parameter (Sat Apr 24 2004 - 05:31:55 PDT)
- AMBER: antechamber bcctype.c typo (Thu Apr 22 2004 - 05:07:32 PDT)
- RE: AMBER: What kind of informations are needed in a .pdb file in order to start using antechamber? (Thu Apr 22 2004 - 05:02:30 PDT)
- RE: AMBER: Turning off non-bond interactions (Wed Apr 21 2004 - 08:58:07 PDT)
- RE: AMBER: Turning off non-bond interactions (Wed Apr 21 2004 - 08:00:14 PDT)
- RE: AMBER: how to use mm_pbsa_statistics.pl independently (Tue Apr 13 2004 - 08:34:26 PDT)
- AMBER: Group in sander (Mon Apr 12 2004 - 12:20:37 PDT)
- Re: AMBER: bug of leap? (Thu Apr 08 2004 - 09:10:06 PDT)
- AMBER: unique atom names (Wed Apr 07 2004 - 07:20:11 PDT)
- RE: AMBER: unique atom names (Wed Apr 07 2004 - 07:21:50 PDT)
- AMBER: question about image - truncated octahedron (Sat Apr 03 2004 - 07:22:14 PST)
Date Chatters
- Ready and (0nline) amber preview.jpg (Tue Apr 27 2004 - 07:14:28 PDT)
- Ready and (0nline) amber preview.jpg (Tue Apr 27 2004 - 07:14:24 PDT)
David A. Case
- Re: AMBER: Amber8 compilation error (Fri Apr 30 2004 - 11:31:57 PDT)
- Re: AMBER: energy criteria. (Fri Apr 30 2004 - 08:36:13 PDT)
- Re: AMBER: Angle Restraining (Fri Apr 30 2004 - 08:39:27 PDT)
- Re: AMBER: just sander not run (Fri Apr 30 2004 - 08:34:47 PDT)
- Re: AMBER: questions about NMODE (Thu Apr 29 2004 - 12:03:54 PDT)
- Re: AMBER: Redhat install (Thu Apr 29 2004 - 10:32:33 PDT)
- Re: AMBER: questions about NMODE (Wed Apr 28 2004 - 17:21:41 PDT)
- Re: AMBER: questions about NMODE (Wed Apr 28 2004 - 15:24:34 PDT)
- Re: AMBER: antechamber bcctype.c typo (Wed Apr 28 2004 - 14:42:11 PDT)
- Re: AMBER: questions about NMODE (Wed Apr 28 2004 - 12:06:01 PDT)
- Re: AMBER: %GIBBS-F-MISMATCH, The parm and coord files disagree on the number of atoms (Wed Apr 28 2004 - 10:56:10 PDT)
- Re: AMBER: question on simulated annealing (Wed Apr 28 2004 - 09:24:59 PDT)
- Re: AMBER: AMBER Gibbs Memory problem (Tue Apr 27 2004 - 12:04:15 PDT)
- Re: AMBER: xleap don't recognize formaldehyde? (Tue Apr 27 2004 - 11:56:30 PDT)
- Re: AMBER: PMEMD and ifort 8 update (Tue Apr 27 2004 - 11:52:02 PDT)
- Re: AMBER: Antechamber: problems with bcc correction (Sun Apr 25 2004 - 00:26:59 PDT)
- Re: AMBER: NSNB parameter (Sat Apr 24 2004 - 13:13:11 PDT)
- Re: AMBER: tutorial of Biotin/Streptavidin (Sat Apr 24 2004 - 13:08:00 PDT)
- Re: AMBER: instalation of amber7 on SUN (Sat Apr 24 2004 - 11:00:40 PDT)
- Re: AMBER: rdparm: a parameter array overflowed (Wed Apr 21 2004 - 10:15:16 PDT)
- Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero (Wed Apr 21 2004 - 08:57:26 PDT)
- Re: AMBER: Turning off non-bond interactions (Wed Apr 21 2004 - 08:54:54 PDT)
- Re: AMBER: Using pbsa (Tue Apr 20 2004 - 18:26:08 PDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? (Tue Apr 20 2004 - 14:50:42 PDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? (Tue Apr 20 2004 - 13:29:47 PDT)
- Re: AMBER: nucgen generated RNA duplex: leap problems (Tue Apr 20 2004 - 11:26:17 PDT)
- Re: AMBER: instalation of amber7 on SUN (Tue Apr 20 2004 - 11:14:58 PDT)
- Re: AMBER: memory problem in NMODE (Mon Apr 19 2004 - 17:56:44 PDT)
- Re: AMBER: memory problem in NMODE (Mon Apr 19 2004 - 14:54:34 PDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? (Mon Apr 19 2004 - 14:45:34 PDT)
- Re: AMBER: xleap console message (Mon Apr 19 2004 - 09:40:46 PDT)
- Re: AMBER: distance measurement in carnal and ptraj (Fri Apr 16 2004 - 08:46:04 PDT)
- Re: AMBER: gibbs termination (Wed Apr 14 2004 - 18:24:10 PDT)
- Re: AMBER: Time to minimize the energy by NMODE (Wed Apr 14 2004 - 15:54:10 PDT)
- Re: AMBER: non-isotropic pressure scaling (Wed Apr 14 2004 - 09:56:52 PDT)
- Re: AMBER: non-isotropic pressure scaling (Wed Apr 14 2004 - 08:36:52 PDT)
- Re: AMBER: Amber 7 on SGI: Sander MPI problem (Tue Apr 13 2004 - 17:37:04 PDT)
- Re: AMBER: water hole (Mon Apr 12 2004 - 17:13:37 PDT)
- Re: AMBER: XLeap: head/tail and frcmod (Mon Apr 12 2004 - 08:15:29 PDT)
- Re: AMBER: equilibration does not start with SHAKE (Fri Apr 09 2004 - 16:16:09 PDT)
- Re: AMBER: NMODE (Fri Apr 09 2004 - 15:46:35 PDT)
- Re: AMBER: warning about improper dihedral in leap!! (Thu Apr 08 2004 - 08:09:11 PDT)
- Re: AMBER: error in antechamber (Thu Apr 08 2004 - 07:58:42 PDT)
- Re: AMBER: respgen (Wed Apr 07 2004 - 18:20:36 PDT)
- Re: AMBER: Ti of CH3 -> NH2 (Wed Apr 07 2004 - 18:17:30 PDT)
- Re: AMBER: error in antechamber (Wed Apr 07 2004 - 08:27:43 PDT)
- Re: AMBER: ANAL: how can i buld the anal.in file? (Wed Apr 07 2004 - 08:21:53 PDT)
- Re: AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? (Wed Apr 07 2004 - 08:19:27 PDT)
- Re: AMBER: more vlimit exceeded problems... (Wed Apr 07 2004 - 08:06:31 PDT)
- Re: AMBER: free energy perturbation (Tue Apr 06 2004 - 18:26:37 PDT)
- Re: AMBER: Question on Amber7... (Tue Apr 06 2004 - 17:25:37 PDT)
- Re: AMBER: new leap with old gibbs (Tue Apr 06 2004 - 17:13:57 PDT)
- Re: AMBER: new leap with old gibbs (Tue Apr 06 2004 - 14:31:10 PDT)
- Re: AMBER: Antechamber compilation error (Mon Apr 05 2004 - 10:12:05 PDT)
- Re: AMBER: minimization of GLH (Mon Apr 05 2004 - 10:06:39 PDT)
- Re: AMBER: minimization of GLH (Mon Apr 05 2004 - 08:26:27 PDT)
- Re: AMBER: AMBER 7 Installation (Fri Apr 02 2004 - 17:37:57 PST)
- Re: AMBER: sander + ew_legal.h (Fri Apr 02 2004 - 17:34:32 PST)
- Re: AMBER: installing amber8 on a dual processor single box (Fri Apr 02 2004 - 11:39:24 PST)
- Re: AMBER: Alignment tensor for Sander RDCs (Fri Apr 02 2004 - 09:46:24 PST)
- Re: AMBER: Question on Amber7... (Thu Apr 01 2004 - 17:33:30 PST)
David E. Konerding DSD Staff
- Re: AMBER: Additional note on ld.so.conf vs. LD_LIBRARY_PATH (Tue Apr 27 2004 - 15:11:33 PDT)
- Re: AMBER: Suggestions for newer pentium chips and hyperthreading with PMEMD (Fri Apr 09 2004 - 15:41:57 PDT)
- Re: AMBER: Intel fortran compiler and -static switch in older pmemd releases (Fri Apr 02 2004 - 13:21:11 PST)
David Smith
- Re: AMBER: free energy perturbation (Tue Apr 06 2004 - 08:45:06 PDT)
david.evans.ulsop.ac.uk
- RE: AMBER: Turning off non-bond interactions (Wed Apr 21 2004 - 09:09:26 PDT)
- AMBER: Turning off non-bond interactions (Wed Apr 21 2004 - 01:22:21 PDT)
Dr. Yong Duan
- Re: Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero (Wed Apr 21 2004 - 08:59:58 PDT)
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero (Wed Apr 21 2004 - 07:41:59 PDT)
- Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero (Wed Apr 21 2004 - 05:56:19 PDT)
Edward Patrick Obrien
- AMBER: Creating Parmtop files for NAMD (Tue Apr 13 2004 - 17:37:52 PDT)
Fang, Jianwen
- AMBER: mm_pbsa question: MAXAT=10000 exceeded (Wed Apr 28 2004 - 21:48:09 PDT)
Gabbar Daaku
- AMBER: CHARMM PSF to PRMTOP (Thu Apr 29 2004 - 14:42:33 PDT)
Greg Jezierski
- AMBER: Simulation of lipid bilayers (Tue Apr 20 2004 - 07:41:50 PDT)
Guanglei Cui
- AMBER: partition error in shake (Fri Apr 23 2004 - 08:18:19 PDT)
- Re: AMBER: solvateCap warning (Fri Apr 23 2004 - 06:47:49 PDT)
- Re: AMBER: xleap console message (Mon Apr 19 2004 - 13:48:28 PDT)
- Re: AMBER: xleap console message (Mon Apr 19 2004 - 10:11:11 PDT)
- AMBER: xleap console message (Mon Apr 19 2004 - 08:06:05 PDT)
- AMBER: scali amber8 (Mon Apr 12 2004 - 13:02:11 PDT)
Hailong Lin
- Re: AMBER: overlap between HE and OE in GLH (Tue Apr 27 2004 - 07:32:47 PDT)
- AMBER: overlap between HE and OE in GLH (Mon Apr 26 2004 - 08:49:36 PDT)
- Re: AMBER: minimization of GLH (Mon Apr 05 2004 - 08:51:47 PDT)
- AMBER: minimization of GLH (Mon Apr 05 2004 - 04:57:31 PDT)
Helios Chen
- AMBER: just sander not run (Fri Apr 30 2004 - 02:27:45 PDT)
- AMBER: Redhat install (Thu Apr 29 2004 - 07:24:17 PDT)
- AMBER: tutorial of Biotin/Streptavidin (Sat Apr 24 2004 - 06:37:43 PDT)
- AMBER: NSNB parameter (Fri Apr 23 2004 - 20:45:42 PDT)
- AMBER: solvateCap warning (Fri Apr 23 2004 - 02:47:25 PDT)
- AMBER: PERT.charge problem in xleap (Fri Apr 02 2004 - 04:10:54 PST)
Herbert Georg
- Re: AMBER: free energy perturbation (Tue Apr 06 2004 - 10:03:51 PDT)
- AMBER: free energy perturbation (Tue Apr 06 2004 - 08:21:55 PDT)
hj zou
- AMBER: free energy perturbation questions (Sat Apr 17 2004 - 07:38:28 PDT)
Holger Gohlke
- Re: AMBER: VS: mmpbsa question (Fri Apr 30 2004 - 00:47:32 PDT)
- Re: AMBER: mm_pbsa question: MAXAT=10000 exceeded (Wed Apr 28 2004 - 23:42:27 PDT)
- Re: AMBER: mm_pbsa examples; delphi in mm_pbsa (Mon Apr 26 2004 - 06:11:28 PDT)
- Re: AMBER: Parameters for nonpolar contribution to solvation (Sat Apr 24 2004 - 05:06:34 PDT)
- Re: AMBER: "matrix" in ptraj (Sat Apr 24 2004 - 04:47:41 PDT)
- Re: AMBER: Time to minimize the energy by NMODE (Wed Apr 14 2004 - 12:40:28 PDT)
- Re: AMBER: atomicfluct in ptraj (Wed Apr 14 2004 - 12:14:47 PDT)
- Re: AMBER: how to use mm_pbsa_statistics.pl independently (Tue Apr 13 2004 - 10:06:43 PDT)
- Re: AMBER: (Thu Apr 08 2004 - 07:20:51 PDT)
Holly Freedman
- Re: AMBER: water hole (Wed Apr 14 2004 - 17:32:06 PDT)
- Re: AMBER: water hole (Mon Apr 12 2004 - 17:39:19 PDT)
- AMBER: water hole (Mon Apr 12 2004 - 14:43:32 PDT)
Ilyas Yildirim
- AMBER: Optimizing a structure and the interpretation of it (Sat Apr 24 2004 - 16:08:14 PDT)
- AMBER: What kind of informations are needed in a .pdb file in order to start using antechamber? (Wed Apr 21 2004 - 21:51:40 PDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? (Tue Apr 20 2004 - 16:42:34 PDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? (Tue Apr 20 2004 - 13:51:55 PDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? (Tue Apr 20 2004 - 13:28:13 PDT)
- Re: AMBER: Do we have to optimize the structure in order to do MEP Calculations? (Tue Apr 20 2004 - 13:13:09 PDT)
- AMBER: Do we have to optimize the structure in order to do MEP Calculations? (Mon Apr 19 2004 - 13:35:45 PDT)
- AMBER: Gaussian 98 Installation (Thu Apr 08 2004 - 13:52:05 PDT)
- AMBER: respgen (Wed Apr 07 2004 - 15:45:33 PDT)
- Re: AMBER: error in antechamber (Wed Apr 07 2004 - 06:30:55 PDT)
- Re: AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? (Tue Apr 06 2004 - 18:25:46 PDT)
- AMBER: MOPAC 7 - How to modift the mopac.sh file to run antechamber properly? (Tue Apr 06 2004 - 17:27:31 PDT)
- AMBER: AMBER 7 Installation (Fri Apr 02 2004 - 15:17:09 PST)
Ioana Cozmuta
- AMBER: universal recognition of chemicals (Mon Apr 26 2004 - 15:15:55 PDT)
- RE: AMBER: script on tutorial page (Fri Apr 09 2004 - 15:03:57 PDT)
- AMBER: script on tutorial page (Thu Apr 08 2004 - 19:25:50 PDT)
Jiten
- AMBER: %GIBBS-F-MISMATCH, The parm and coord files disagree on the number of atoms (Tue Apr 27 2004 - 19:29:25 PDT)
- AMBER: AMBER Gibbs Memory problem (Tue Apr 27 2004 - 09:01:09 PDT)
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero (Wed Apr 21 2004 - 06:28:26 PDT)
- Re: AMBER: How to solve these warnings? (Wed Apr 21 2004 - 05:06:41 PDT)
- Re: AMBER: loading PDB problem in leap (Sun Apr 18 2004 - 20:57:16 PDT)
- Re: AMBER: Dipole moment changes during MD (Fri Apr 09 2004 - 17:48:03 PDT)
- Re: AMBER: Dipole moment changes during MD (Fri Apr 09 2004 - 11:05:01 PDT)
- AMBER: Dipole moment changes during MD (Thu Apr 08 2004 - 18:31:17 PDT)
John Mongan
- Re: AMBER: Titratable amino acid termini (Tue Apr 27 2004 - 16:28:15 PDT)
Jon Gray
- Re: AMBER: PMEMD Problems... (Mon Apr 05 2004 - 20:56:47 PDT)
- AMBER: PMEMD Problems... (Mon Apr 05 2004 - 13:38:23 PDT)
Jufang Shan
- AMBER: how to use mm_pbsa_statistics.pl independently (Mon Apr 12 2004 - 19:23:36 PDT)
Kazuo Koyano
- Re: AMBER: Optimizing a structure and the interpretation of it (Sun Apr 25 2004 - 22:14:25 PDT)
- AMBER: mm_pbsa examples; delphi in mm_pbsa (Thu Apr 22 2004 - 01:34:03 PDT)
Kristina Furse
- RE: AMBER: How to solve these warnings? (Wed Apr 21 2004 - 13:35:57 PDT)
- RE: AMBER: free energy perturbation (Tue Apr 06 2004 - 09:53:39 PDT)
L Jin
- AMBER: XLeap: head/tail and frcmod (Mon Apr 12 2004 - 04:35:47 PDT)
Linda Prengaman
- AMBER: more vlimit exceeded problems... (Tue Apr 06 2004 - 19:22:44 PDT)
Lubos Vrbka
- Re: AMBER: amber8 performance on linux cluster (Tue Apr 27 2004 - 10:26:14 PDT)
- Re: AMBER: pmemd and mpich - myrinet (Tue Apr 27 2004 - 07:58:25 PDT)
- AMBER: PMEMD scaling (Sun Apr 25 2004 - 07:07:43 PDT)
- Re: AMBER: pmemd and mpich - myrinet (Sat Apr 24 2004 - 14:18:11 PDT)
- Re: AMBER: pmemd and mpich - myrinet (Sat Apr 24 2004 - 03:50:02 PDT)
- Re: AMBER: pmemd and mpich - myrinet (Fri Apr 23 2004 - 11:18:36 PDT)
- Re: AMBER: pmemd and mpich - myrinet (Fri Apr 23 2004 - 10:33:32 PDT)
- AMBER: pmemd and mpich - myrinet (Fri Apr 23 2004 - 08:59:31 PDT)
- Re: AMBER: non-isotropic pressure scaling (Wed Apr 14 2004 - 12:21:54 PDT)
- Re: AMBER: non-isotropic pressure scaling (Wed Apr 14 2004 - 09:18:22 PDT)
- Re: AMBER: non-isotropic pressure scaling (Wed Apr 14 2004 - 05:48:59 PDT)
- Re: AMBER: amber/pmemd with mpiexec (Sun Apr 11 2004 - 07:00:36 PDT)
- AMBER: amber/pmemd with mpiexec (Sat Apr 10 2004 - 09:50:30 PDT)
M. L. Dodson
- Re: AMBER: Creating Parmtop files for NAMD (Tue Apr 13 2004 - 18:39:26 PDT)
Mail Delivery Subsystem
- Returned mail: see transcript for details (Sat Apr 10 2004 - 13:42:30 PDT)
Marc Baaden
- Re: AMBER: WHICH LINUX (Tue Apr 13 2004 - 08:20:35 PDT)
Mengjuei Hsieh
- Re: AMBER: Redhat install (Thu Apr 29 2004 - 21:44:12 PDT)
- Re: AMBER: Mac OSX xleap compilation (Fri Apr 02 2004 - 11:46:14 PST)
- Re: AMBER: Mac OSX xleap compilation (Thu Apr 01 2004 - 23:19:30 PST)
Michael Crowley
- Re: AMBER: non-periodic simulation and box information !! (Wed Apr 21 2004 - 10:32:58 PDT)
Mike
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me (Sat Apr 17 2004 - 10:35:22 PDT)
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me (Fri Apr 16 2004 - 22:19:02 PDT)
- AMBER: Problem in loading a PDB file in Leap - Please help me (Wed Apr 14 2004 - 23:25:07 PDT)
Mikyung Seo
- AMBER: esp or resp for all_amino94.lib (Fri Apr 30 2004 - 16:06:54 PDT)
- AMBER: neutral residues (Mon Apr 26 2004 - 09:33:04 PDT)
- AMBER: parameters for neutral Arg (Fri Apr 23 2004 - 13:51:14 PDT)
- AMBER: protein-carbohydrate complex (Thu Apr 22 2004 - 15:27:31 PDT)
- AMBER: MD for protein-carbohydrate complex (Thu Apr 22 2004 - 13:03:33 PDT)
Ming Lei
- AMBER: "No radius found for F" error and vdw radii for F in MMPBSA (Tue Apr 20 2004 - 08:47:40 PDT)
nie beining
- AMBER: Parameters for ions? (Fri Apr 02 2004 - 10:15:51 PST)
Olayiwola Adekoya
- AMBER: VS: mmpbsa question (Thu Apr 29 2004 - 02:32:32 PDT)
Oliver Hucke
- AMBER: Antechamber: problems with bcc correction (Fri Apr 23 2004 - 15:08:47 PDT)
- AMBER: restraintmask and ambmask (Wed Apr 21 2004 - 17:17:24 PDT)
- AMBER: gaff "ha" atom type (Wed Apr 21 2004 - 13:38:20 PDT)
- Re: AMBER: how to check metal ion bonding ? (Tue Apr 13 2004 - 13:28:09 PDT)
- AMBER: equilibration does not start with SHAKE (Fri Apr 09 2004 - 15:30:55 PDT)
- AMBER: which atoms are H's for SHAKE? (Tue Apr 06 2004 - 10:32:12 PDT)
Patil, Sachin
- AMBER: amber8 tutorial (Sun Apr 04 2004 - 17:03:20 PDT)
pengyo.UMDNJ.EDU
- Re: AMBER: ptraj (Mon Apr 12 2004 - 14:22:26 PDT)
- AMBER: ptraj (Mon Apr 12 2004 - 13:09:22 PDT)
- Re: AMBER: question about image (Fri Apr 02 2004 - 19:35:06 PST)
Pmartin
- Re: AMBER: Question on Amber7... (Tue Apr 06 2004 - 14:44:34 PDT)
- AMBER: Question on Amber7... (Thu Apr 01 2004 - 15:31:49 PST)
Pooja Narang
- AMBER: Angle Restraining (Fri Apr 30 2004 - 00:17:30 PDT)
Pradipta Bandyopadhyay
- AMBER: non-periodic simulation and box information !! (Wed Apr 21 2004 - 08:56:31 PDT)
- AMBER: warning about improper dihedral in leap!! (Thu Apr 08 2004 - 04:50:18 PDT)
Qiang Lu
- Re[2]: AMBER: atomicfluct in ptraj (Wed Apr 14 2004 - 15:06:32 PDT)
- AMBER: atomicfluct in ptraj (Wed Apr 14 2004 - 11:12:06 PDT)
quch quch
- AMBER: amber8 performance on linux cluster (Tue Apr 27 2004 - 10:05:45 PDT)
- RE: AMBER: compile amber8 in linux with ifort (Fri Apr 23 2004 - 14:50:52 PDT)
- AMBER: compile amber8 in linux with ifort (Fri Apr 23 2004 - 14:08:05 PDT)
Raj Badhan
- Re: Re: AMBER: Amber and Linux compilation (Wed Apr 14 2004 - 07:17:18 PDT)
- Re: AMBER: Amber and Linux compilation (Wed Apr 14 2004 - 05:54:54 PDT)
- Re: AMBER: Amber and Linux compilation (Wed Apr 14 2004 - 04:59:34 PDT)
- AMBER: Amber and Linux compilation (Wed Apr 14 2004 - 04:26:36 PDT)
- AMBER: WHICH LINUX (Tue Apr 13 2004 - 07:50:52 PDT)
riccardodesantis.fastwebnet.it
- AMBER: ANAL: how can i buld the anal.in file? (Tue Apr 06 2004 - 23:14:49 PDT)
- AMBER: (Tue Apr 06 2004 - 23:02:57 PDT)
rluo.uci.edu
- Re: AMBER: pbsa (Thu Apr 15 2004 - 11:14:34 PDT)
Robert Duke
- Re: AMBER: Additional note on ld.so.conf vs. LD_LIBRARY_PATH (Tue Apr 27 2004 - 15:36:51 PDT)
- AMBER: Additional note on ld.so.conf vs. LD_LIBRARY_PATH (Tue Apr 27 2004 - 11:29:35 PDT)
- AMBER: PMEMD and ifort 8 update (Tue Apr 27 2004 - 11:08:05 PDT)
- Re: AMBER: PMEMD scaling (Sun Apr 25 2004 - 08:24:11 PDT)
- Re: AMBER: NSNB parameter (Sat Apr 24 2004 - 20:05:51 PDT)
- Re: AMBER: NSNB parameter (Sat Apr 24 2004 - 07:05:05 PDT)
- Re: AMBER: pmemd and mpich - myrinet (Sat Apr 24 2004 - 05:31:59 PDT)
- Re: AMBER: pmemd and mpich - myrinet (Fri Apr 23 2004 - 10:57:48 PDT)
- Re: AMBER: pmemd and mpich - myrinet (Fri Apr 23 2004 - 09:23:37 PDT)
- Re: AMBER: Question about compiling PMEMD (Thu Apr 22 2004 - 05:10:47 PDT)
- Re: AMBER: Question about compiling PMEMD (Thu Apr 22 2004 - 04:35:45 PDT)
- Re: AMBER: Turning off non-bond interactions (Wed Apr 21 2004 - 09:12:11 PDT)
- Re: AMBER: non-periodic simulation and box information !! (Wed Apr 21 2004 - 09:04:54 PDT)
- Re: AMBER: Question about compiling PMEMD (Wed Apr 21 2004 - 05:27:02 PDT)
- AMBER: Intel Fortran Compiler, 7.1 status (Mon Apr 19 2004 - 08:32:49 PDT)
- Re: AMBER: non-isotropic pressure scaling (Sun Apr 18 2004 - 06:44:09 PDT)
- Re: AMBER: amber/pmemd with mpiexec (Mon Apr 12 2004 - 07:41:22 PDT)
- Re: AMBER: Compiling Amber 8 (Mon Apr 12 2004 - 07:22:27 PDT)
- Re: AMBER: amber/pmemd with mpiexec (Sat Apr 10 2004 - 10:21:15 PDT)
- AMBER: Suggestions for newer pentium chips and hyperthreading with PMEMD (Fri Apr 09 2004 - 14:13:59 PDT)
- Re: AMBER: PMEMD Problems... (Mon Apr 05 2004 - 21:38:58 PDT)
- Re: AMBER: PMEMD Problems... (Mon Apr 05 2004 - 14:13:24 PDT)
- Re: AMBER: Intel fortran compiler and -static switch in older pmemd releases (Fri Apr 02 2004 - 13:35:45 PST)
- AMBER: Intel fortran compiler and -static switch in older pmemd releases (Fri Apr 02 2004 - 13:10:49 PST)
- Re: AMBER: installing amber8 on a dual processor single box (Fri Apr 02 2004 - 10:58:35 PST)
Rohn Wood
- Re: AMBER: Amber 7 on SGI: Sander MPI problem (Wed Apr 14 2004 - 16:48:58 PDT)
- Re: AMBER: Amber 7 on SGI: Sander MPI problem (Wed Apr 14 2004 - 10:28:17 PDT)
- AMBER: Amber 7 on SGI: Sander MPI problem (Tue Apr 13 2004 - 15:34:12 PDT)
Ross Walker
- RE: AMBER: universal recognition of chemicals (Mon Apr 26 2004 - 15:35:41 PDT)
- RE: AMBER: compile amber8 in linux with ifort (Fri Apr 23 2004 - 14:42:39 PDT)
- RE: AMBER: compile amber8 in linux with ifort (Fri Apr 23 2004 - 14:23:21 PDT)
- RE: AMBER: compiling Amber 8 (Fri Apr 16 2004 - 11:47:36 PDT)
- RE: AMBER: xleap bug? (Wed Apr 14 2004 - 15:48:18 PDT)
- RE: AMBER: Dipole moment changes during MD (Fri Apr 09 2004 - 14:56:48 PDT)
- RE: AMBER: Suggestions for newer pentium chips and hyperthreading with PMEMD (Fri Apr 09 2004 - 14:38:18 PDT)
- RE: AMBER: Dipole moment changes during MD (Fri Apr 09 2004 - 09:48:29 PDT)
- RE: AMBER: script on tutorial page (Thu Apr 08 2004 - 21:21:44 PDT)
- RE: AMBER: amber8 tutorial (Sun Apr 04 2004 - 19:45:52 PDT)
Sarah Harris
- AMBER: Titratable amino acid termini (Tue Apr 27 2004 - 02:43:16 PDT)
scopio
- Re: AMBER: Redhat install (Thu Apr 29 2004 - 17:32:26 PDT)
- AMBER: xleap don't recognize formaldehyde? (Tue Apr 27 2004 - 07:53:00 PDT)
Scott Brozell
- Re: AMBER: partition error in shake (Tue Apr 27 2004 - 15:26:44 PDT)
- Re: AMBER: Error message while testing (Mon Apr 12 2004 - 18:10:30 PDT)
- Re: AMBER: scali amber8 (Mon Apr 12 2004 - 15:54:42 PDT)
Sergio Emanuel Galembeck
- AMBER: PARMSCAN (Mon Apr 26 2004 - 11:29:05 PDT)
Sergio Pantano
- AMBER: Mac OSX xleap compilation (Thu Apr 01 2004 - 22:32:07 PST)
Sichun Yang
- Re: AMBER: "matrix" in ptraj (Sat Apr 24 2004 - 16:20:50 PDT)
- AMBER: "matrix" in ptraj (Fri Apr 23 2004 - 18:19:28 PDT)
- AMBER: Carnal in Amber7 (Wed Apr 07 2004 - 21:03:35 PDT)
Sivakolundu, Sivashankar
- AMBER: Amber 8 ptraj segmentation fault (Tue Apr 06 2004 - 22:49:08 PDT)
Skauge Tormod
- Re: AMBER: nucgen generated RNA duplex: leap problems (Tue Apr 20 2004 - 08:03:09 PDT)
Suwipa saen-oon
- AMBER: loading PDB problem in leap (Sun Apr 18 2004 - 02:35:35 PDT)
Teletchéa Stéphane
- Re: Re: AMBER: Amber and Linux compilation (Wed Apr 14 2004 - 08:08:29 PDT)
Thomas C. Bishop
- AMBER: ptraj projections help (Mon Apr 19 2004 - 10:41:08 PDT)
- Re: AMBER: Creating Parmtop files for NAMD (Wed Apr 14 2004 - 06:49:23 PDT)
- AMBER: ptraj parser (Wed Apr 07 2004 - 08:01:15 PDT)
Thomas E. Cheatham, III
- Re: AMBER: "matrix" in ptraj (Sat Apr 24 2004 - 17:30:34 PDT)
- Re: AMBER: ptraj (Mon Apr 12 2004 - 13:23:12 PDT)
- Re: AMBER: Group in sander (Mon Apr 12 2004 - 12:30:46 PDT)
- RE: AMBER: script on tutorial page (Sat Apr 10 2004 - 13:31:51 PDT)
- Re: AMBER: question about image - truncated octahedron (Mon Apr 05 2004 - 14:21:36 PDT)
- Re: AMBER: question about image (Mon Apr 05 2004 - 09:37:00 PDT)
- Re: AMBER: question about image (Fri Apr 02 2004 - 15:51:01 PST)
Thomas Steinbrecher
- AMBER: Parameters for nonpolar contribution to solvation (Fri Apr 23 2004 - 10:48:42 PDT)
- AMBER: Using pbsa (Tue Apr 20 2004 - 16:16:37 PDT)
tim
- Re: AMBER: neutral residues (Mon Apr 26 2004 - 07:26:09 PDT)
- Re: AMBER: overlap between HE and OE in GLH (Mon Apr 26 2004 - 07:11:08 PDT)
- Re: AMBER: Problem in loading a PDB file in Leap - Please help me (Wed Apr 14 2004 - 22:53:41 PDT)
- Re: AMBER: salt concentration (Wed Apr 14 2004 - 04:56:52 PDT)
- AMBER: Alignment tensor for Sander RDCs (Fri Apr 02 2004 - 06:47:47 PST)
Tod Pascal
- RE: AMBER: Question about compiling PMEMD (Wed Apr 21 2004 - 23:29:55 PDT)
- AMBER: Question about compiling PMEMD (Wed Apr 21 2004 - 00:21:40 PDT)
Tomas Hrobarik
- AMBER: new atom and increase the number of bonds (Fri Apr 16 2004 - 07:01:56 PDT)
Tru Huynh
- Re: AMBER: Amber 7 on SGI: Sander MPI problem (Wed Apr 14 2004 - 05:45:08 PDT)
Venkata S Koppuravuri
- AMBER: question on simulated annealing (Wed Apr 28 2004 - 09:00:39 PDT)
- AMBER: how to check metal ion bonding ? (Tue Apr 13 2004 - 12:13:52 PDT)
Viktor Hornak
- Re: AMBER: compile amber8 in linux with ifort (Fri Apr 23 2004 - 14:49:49 PDT)
- Re: AMBER: restraintmask and ambmask (Thu Apr 22 2004 - 05:27:38 PDT)
- Re: AMBER: distance dependent dielectric (Wed Apr 21 2004 - 05:23:31 PDT)
- AMBER: Re: a new question (Mon Apr 12 2004 - 20:02:35 PDT)
- Re: AMBER: Group in sander (Mon Apr 12 2004 - 12:13:15 PDT)
- Re: AMBER: Compiling Amber 8 (Mon Apr 12 2004 - 06:53:29 PDT)
- Re: AMBER: ptraj parser (Wed Apr 07 2004 - 09:20:40 PDT)
- Re: AMBER: amber8 tutorial (Sun Apr 04 2004 - 19:03:56 PDT)
Wen Li
- AMBER: Euclidean distances (Thu Apr 22 2004 - 07:49:45 PDT)
- AMBER: rdparm: a parameter array overflowed (Wed Apr 21 2004 - 09:04:17 PDT)
xhu1.memphis.edu
- Re: AMBER: questions about NMODE (Thu Apr 29 2004 - 16:34:08 PDT)
- Re: AMBER: questions about NMODE (Thu Apr 29 2004 - 11:11:41 PDT)
- Re: AMBER: questions about NMODE (Wed Apr 28 2004 - 16:04:04 PDT)
- Re: AMBER: questions about NMODE (Wed Apr 28 2004 - 14:47:18 PDT)
- AMBER: questions about NMODE (Wed Apr 28 2004 - 10:43:34 PDT)
- Re: AMBER: memory problem in NMODE (Mon Apr 19 2004 - 16:43:47 PDT)
- AMBER: memory problem in NMODE (Mon Apr 19 2004 - 13:06:46 PDT)
Xiao He
- Re: Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero (Wed Apr 21 2004 - 06:48:06 PDT)
- Re: Re: AMBER: Why are there LENNARD_JONES_COEF A,B zero (Wed Apr 21 2004 - 06:05:49 PDT)
- AMBER: Why are there LENNARD_JONES_COEF A,B zero (Wed Apr 21 2004 - 01:46:29 PDT)
- AMBER: How to solve these warnings? (Wed Apr 21 2004 - 01:37:40 PDT)
xiaowei li
- AMBER: Time to minimize the energy by NMODE (Wed Apr 14 2004 - 11:23:02 PDT)
- AMBER: Group in sander (Mon Apr 12 2004 - 12:05:29 PDT)
- AMBER: NMODE (Fri Apr 09 2004 - 13:20:23 PDT)
Ye Mei
- Re: Re: AMBER: Amber and Linux compilation (Wed Apr 14 2004 - 06:26:40 PDT)
- Re: AMBER: Amber and Linux compilation (Wed Apr 14 2004 - 04:52:55 PDT)
- Re: AMBER: Antechamber compilation: leap error (Mon Apr 12 2004 - 04:55:11 PDT)
- Re: AMBER: bug of leap? (Wed Apr 07 2004 - 19:40:29 PDT)
- AMBER: bug of leap? (Wed Apr 07 2004 - 19:29:07 PDT)
- AMBER: bug of leap? (Wed Apr 07 2004 - 19:27:11 PDT)
Yong Duan
- RE: AMBER: amber8 performance on linux cluster (Tue Apr 27 2004 - 10:47:21 PDT)
- RE: AMBER: neutral residues (Mon Apr 26 2004 - 10:25:46 PDT)
- RE: AMBER: overlap between HE and OE in GLH (Mon Apr 26 2004 - 10:24:32 PDT)
- RE: AMBER: overlap between HE and OE in GLH (Mon Apr 26 2004 - 10:17:00 PDT)
Youyi Peng
- AMBER: question about image (Fri Apr 02 2004 - 14:41:36 PST)
Yusuf Abdulghani
- Re: AMBER: Mac OSX xleap compilation (Fri Apr 02 2004 - 11:16:14 PST)

Amber Archive Apr 2004 by author