AMBER: ptraj projections help

From: Thomas C. Bishop <bishop.tulane.edu>
Date: Mon, 19 Apr 2004 12:41:08 -0500

Dear amber,

 I have a couple of questions about ptraj.

1) Can the modes be read from a stack instead of disk
to avoid an additional "sweep" through the trajectory as stated
in the Amber 8 manual pg 210.

2)How does one construct an animation of different normal modes
given the output data?

3) Does anyone have a script they want to share that does 2)?

4) Any recommended references for more information??

Of interest may be the Amber Archive on Quasi-Harmonic/PCA and refs therein.
 http://amber.ch.ic.ac.uk/archive/200301/0215.html

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Received on Mon Apr 19 2004 - 18:53:01 PDT