On Tue, Apr 13, 2004 at 04:34:12PM -0600, Rohn Wood wrote:
> Compiling Amber with Machine.sgi_mpi results in a bad sander module
> (see errors below under PROBLEM). I have seen a few references to this
> problem on the list, but no clear resolution. The only solution that
> included a code modification was found at:
> http://amber.ch.ic.ac.uk/archive/200311/0194.html
> However, this fix did not work for me.
>
> Any insights would be appreciated.
>
> Rohn Wood
> University of Montana-Missoula
> ----------------
>
> ARCHITECTURE
>
> Origin 2400 32 CPU R12000
just .02 cents
the R12K is a 64 bits cpu, and you have errors in 32 bits libs?
Does "versions mpi" give you both 32 and 64 bits libs?
[tru.rosebud ~]$ versions mpi
I = Installed, R = Removed
Name Date Description
I mpi 03/05/2004 MPI 4.3 (MPT 1.8)
I mpi.hdr 03/05/2004 MPI 4.3 Headers
I mpi.hdr.lib 03/05/2004 MPI 4.3 Library Headers
I mpi.man 03/05/2004 MPI 4.3 Man Pages
I mpi.man.base 03/05/2004 MPI 4.3 Man Pages
I mpi.sw 03/05/2004 MPI 4.3 Software
I mpi.sw.mpirun 03/05/2004 MPI 4.3 Program Launcher
I mpi.sw32 03/05/2004 MPI 4.3 N32 Libraries
I mpi.sw32.lib 03/05/2004 MPI 4.3 N32 DSO Libraries
I mpi.sw64 03/05/2004 MPI 4.3 N64 Libraries
I mpi.sw64.lib 03/05/2004 MPI 4.3 N64 DSO Libraries
> MPI: Program ../../exe/sander, Rank 0, Process 142987 received signal
> SIGSEGV(11)
>
>
> MPI: --------stack traceback-------
> PC: 0x5ddb100 MPI_SGI_stacktraceback in /usr/lib32/libmpi.so
> PC: 0x5ddb544 first_arriver_handler in /usr/lib32/libmpi.so
> PC: 0x5ddb7d8 slave_sig_handler in /usr/lib32/libmpi.so
> PC: 0xfaee79c _sigtramp in /usr/lib32/libc.so.1
> PC: 0xa6ca7c0 flush_ in /usr/lib32/libfortran.so
> PC: 0x10164d6c amflsh in ../../exe/sander
> PC: 0x1000c150 sander in ../../exe/sander
> PC: 0xace9d74 main in /usr/lib32/libftn.so
all 32 bits libs ? not 64? they should be living in /usr/lib64/
good luck,
Tru
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Received on Wed Apr 14 2004 - 13:53:00 PDT
