Amber Archive Jan 2022: by subject

[AMBER] 1D-RISM Convergence
- tluchko (Tue Jan 04 2022 - 12:04:14 PST)
- ABDUL BASIT (Tue Jan 04 2022 - 06:34:50 PST)
[AMBER] ?==?utf-8?q? Distorted water molecules in QM partition (possible?==?utf-8?q? bug)
- Antonio Frances Monerris (Tue Jan 18 2022 - 08:26:31 PST)
[AMBER] [External] How to calculate multipole moment？
- Scott Boesch (Wed Jan 12 2022 - 04:57:49 PST)
- Scott Boesch (Wed Jan 12 2022 - 04:55:59 PST)
[AMBER] [MCPB] The force field parameter problem of the MCPB
- Huimin Tian (Fri Jan 14 2022 - 05:30:34 PST)
[AMBER] A4500 Benchmarks
- Ross Walker (Tue Jan 18 2022 - 06:50:49 PST)
[AMBER] About the drug charge _antechamber
- David A Case (Wed Jan 12 2022 - 17:51:46 PST)
- Arooma Maryam (Wed Jan 12 2022 - 10:21:36 PST)
[AMBER] adding ions to half the water box
- Hai Nguyen (Tue Jan 25 2022 - 18:04:42 PST)
- David A Case (Tue Jan 25 2022 - 10:19:28 PST)
- Daniel Konstantinovsky (Tue Jan 25 2022 - 08:54:53 PST)
[AMBER] Adding on terminal hydrogen/phosphate to nucleosides in ff86?
- Kenneth Huang (Thu Jan 20 2022 - 11:03:01 PST)
[AMBER] Aligning a dimer for PCA analysis
- Dr. Anselm Horn (Mon Jan 24 2022 - 01:33:09 PST)
- Daniel Roe (Fri Jan 21 2022 - 11:23:25 PST)
- Kodituwakku,Dimuthu Nirmani (Fri Jan 21 2022 - 08:19:36 PST)
[AMBER] amber20 - test suite picks up the wrong libgfortran
- Mark Dixon (Wed Jan 05 2022 - 07:02:02 PST)
- tluchko (Tue Jan 04 2022 - 13:46:08 PST)
- David A Case (Mon Jan 03 2022 - 13:08:23 PST)
[AMBER] Amber20 minimization, the rendered .rst file is corrupted and unreadable
- Yi Ren (Sat Jan 08 2022 - 16:59:24 PST)
- Daniel Roe (Sat Jan 08 2022 - 06:42:14 PST)
- Carlos Simmerling (Sat Jan 08 2022 - 06:07:27 PST)
- David A Case (Sat Jan 08 2022 - 05:43:00 PST)
- Yi Ren (Fri Jan 07 2022 - 19:01:01 PST)
[AMBER] Amber21/Orca5.0?==?utf-8?q? QM/MM simulations
- Antonio Frances Monerris (Mon Jan 10 2022 - 11:22:07 PST)
[AMBER] any working singularity or docker recipe? (esp for CUDA and MPI)
- David A Case (Tue Jan 25 2022 - 06:22:07 PST)
- Michael Coleman (Mon Jan 24 2022 - 15:51:36 PST)
- David A Case (Mon Jan 24 2022 - 06:27:00 PST)
- Karl Kirschner (Mon Jan 24 2022 - 00:20:57 PST)
- Michael Coleman (Sun Jan 23 2022 - 13:42:39 PST)
- Gerald Monard (Sun Jan 23 2022 - 03:39:06 PST)
- Gerald Monard (Sun Jan 23 2022 - 03:31:05 PST)
- Michael Coleman (Fri Jan 21 2022 - 21:05:14 PST)
[AMBER] Archive page
- James Kress (Fri Jan 21 2022 - 15:48:27 PST)
- Thomas Cheatham (Fri Jan 21 2022 - 15:29:52 PST)
[AMBER] attaching a residue to DNA
- Christina Bergonzo (Mon Jan 10 2022 - 06:04:23 PST)
- Daniel Konstantinovsky (Sun Jan 09 2022 - 05:37:22 PST)
[AMBER] Bad atom type error and invalid periodicity error in MMPBSA.py
- Yi Ren (Mon Jan 17 2022 - 00:13:37 PST)
[AMBER] Calculating energies per residue pair, rather than per residue
- Carlos Simmerling (Fri Jan 28 2022 - 02:09:14 PST)
- Matthew Guberman-Pfeffer (Thu Jan 27 2022 - 19:34:24 PST)
- Tue (Thu Jan 27 2022 - 18:09:32 PST)
[AMBER] CMAP and NBFIX Charmm36 in amber
- David A Case (Thu Jan 13 2022 - 12:34:57 PST)
- Burns Casamayor, Violeta (Thu Jan 13 2022 - 10:31:56 PST)
[AMBER] Comparing trajectories
- Rodrigo Galindo-Murillo (Wed Jan 19 2022 - 13:45:14 PST)
- Reza Khayat (Wed Jan 19 2022 - 13:30:11 PST)
- Carlos Simmerling (Wed Jan 19 2022 - 13:16:36 PST)
- Thomas Cheatham (Wed Jan 19 2022 - 13:16:26 PST)
- Reza Khayat (Wed Jan 19 2022 - 13:04:17 PST)
[AMBER] Converting %FLAG XVV array found in .xvv file into a readable format similar to other .*vv files
- Jason Swails (Thu Jan 20 2022 - 06:23:31 PST)
- Daniel Fowles (Wed Jan 19 2022 - 04:26:45 PST)
- Daniel Fowles (Tue Jan 18 2022 - 02:25:44 PST)
[AMBER] CPPTRAJ for Buried SA
- King Wu (Tue Jan 25 2022 - 16:16:53 PST)
[AMBER] CPPTRAJ Segmentation Fault with modified topology file
- Daniel Roe (Mon Jan 10 2022 - 07:42:17 PST)
- Daniel Roe (Sun Jan 09 2022 - 14:13:49 PST)
- Chris Lee (Sun Jan 09 2022 - 08:43:03 PST)
[AMBER] cudaMemcpy GpuBuffer::Download failed an illegal memory access was encountered
- David A Case (Tue Jan 04 2022 - 13:10:10 PST)
- Renato Araujo (Tue Jan 04 2022 - 09:42:54 PST)
[AMBER] CV_type
- Feng Pan (Fri Jan 07 2022 - 08:05:47 PST)
- Ming Tang (Thu Jan 06 2022 - 18:40:55 PST)
[AMBER] DE Shaw RNA parameters error
- David A Case (Sun Jan 02 2022 - 10:03:30 PST)
[AMBER] dihedral restraints slowing down simulation
- Carlos Simmerling (Fri Jan 28 2022 - 09:30:46 PST)
- Richard Kullmann (Thu Jan 27 2022 - 06:28:19 PST)
- Kellon Belfon (Thu Jan 27 2022 - 05:09:15 PST)
- Kellon Belfon (Thu Jan 27 2022 - 04:48:34 PST)
- Carlos Simmerling (Thu Jan 27 2022 - 03:43:40 PST)
- Richard Kullmann (Thu Jan 27 2022 - 01:57:40 PST)
- Kellon Belfon (Thu Jan 27 2022 - 00:46:42 PST)
- Carlos Simmerling (Wed Jan 26 2022 - 13:41:43 PST)
- David A Case (Wed Jan 26 2022 - 12:13:51 PST)
- Richard Kullmann (Wed Jan 26 2022 - 06:22:50 PST)
[AMBER] Distorted average pdb structure from 10 ns trajectory !!!
- Carlos Simmerling (Sun Jan 23 2022 - 06:11:04 PST)
- A R (Sun Jan 23 2022 - 06:03:06 PST)
[AMBER] Distorted water molecules in QM partition (possible bug)
- David A Case (Tue Jan 18 2022 - 04:42:33 PST)
- Antonio Frances Monerris (Mon Jan 17 2022 - 07:56:26 PST)
[AMBER] Error in MMPBSA calculation
- Sruthi Sudhakar (Fri Jan 14 2022 - 23:25:20 PST)
- Sruthi Sudhakar (Fri Jan 14 2022 - 13:54:15 PST)
[AMBER] Extending constant pH to additional titratable groups
- Jason Swails (Mon Jan 03 2022 - 09:12:30 PST)
[AMBER] FEP calculation in tutorial 9
- xiangyu (Sat Jan 08 2022 - 08:12:13 PST)
[AMBER] GaMD error: cudaMemcpy GpuBuffer::Download failed an illegal memory access was encountered
- Li,Haoxi (Fri Jan 21 2022 - 08:37:26 PST)
[AMBER] GCC and EuroSAMPL Satellite Workshop 2022 - Submission deadline extension
- Guessregen, Stefan /DE (Wed Jan 05 2022 - 09:50:50 PST)
[AMBER] ghost pmemd.cuda process ?
- Jordi Bujons (Tue Jan 25 2022 - 07:52:59 PST)
- Ross Walker (Mon Jan 24 2022 - 06:45:16 PST)
- Jordi Bujons (Sat Jan 22 2022 - 13:02:53 PST)
[AMBER] Heating only a region of the system
- David A Case (Fri Jan 07 2022 - 09:20:29 PST)
- Liao (Wed Jan 05 2022 - 12:05:15 PST)
[AMBER] Help in ligand preparation_antechamber
- David A Case (Tue Jan 11 2022 - 07:20:00 PST)
- Arooma Maryam (Mon Jan 10 2022 - 10:59:19 PST)
[AMBER] How to compute MM/PB(GB)SA with Extra Points
- David A Case (Mon Jan 31 2022 - 18:17:32 PST)
- Matthew Guberman-Pfeffer (Mon Jan 31 2022 - 11:16:36 PST)
- Ray Luo (Mon Jan 31 2022 - 10:59:52 PST)
- David A Case (Mon Jan 31 2022 - 10:23:18 PST)
- 王世玉 (Wed Jan 19 2022 - 05:56:30 PST)
[AMBER] how to obtain index of atoms based on residue and atom masks
- Ming Tang (Wed Jan 19 2022 - 21:35:31 PST)
- Hai Nguyen (Wed Jan 19 2022 - 12:31:06 PST)
- Dr. Anselm Horn (Wed Jan 19 2022 - 02:23:28 PST)
- Matthew Guberman-Pfeffer (Tue Jan 18 2022 - 19:12:31 PST)
- Ming Tang (Tue Jan 18 2022 - 17:01:41 PST)
[AMBER] How to solve Error: an illegal memory access was encountered launching kernel kClearForces on amber?
- natalia francisca rodriguez cabello (Fri Jan 14 2022 - 04:24:07 PST)
- David A Case (Thu Jan 13 2022 - 18:13:45 PST)
- Mohamed Aboelnga (Thu Jan 13 2022 - 16:56:45 PST)
- natalia francisca rodriguez cabello (Thu Jan 13 2022 - 13:16:07 PST)
[AMBER] how to stop making terminal residue
- Dr. Anselm Horn (Wed Jan 12 2022 - 01:01:00 PST)
- David A Case (Tue Jan 11 2022 - 08:06:20 PST)
- Daniel Konstantinovsky (Tue Jan 11 2022 - 07:08:54 PST)
- David A Case (Tue Jan 11 2022 - 06:18:46 PST)
- Daniel Konstantinovsky (Mon Jan 10 2022 - 08:34:03 PST)
[AMBER] How to use MN2+ parameter (.dat and .prp) files downloaded form AMBER parameter database of Bryce group
- Pranabesh Mandal (PhD, Bioinformatics August-2019) (Fri Jan 07 2022 - 21:04:28 PST)
- Dr. Anselm Horn (Thu Jan 06 2022 - 23:14:43 PST)
- Pranabesh Mandal (PhD, Bioinformatics August-2019) (Thu Jan 06 2022 - 21:18:18 PST)
- Dr. Anselm Horn (Wed Jan 05 2022 - 04:40:06 PST)
- Pranabesh Mandal (PhD, Bioinformatics August-2019) (Wed Jan 05 2022 - 03:49:37 PST)
[AMBER] Hydrogen Bonding Analysis
- Daniel Roe (Wed Jan 05 2022 - 06:21:18 PST)
[AMBER] hydrogen mass repartitioning with accelerated MD
- James Kress (Sun Jan 23 2022 - 11:05:32 PST)
[AMBER] Improved speed of CPPTRAJ post-clustering steps for large sets
- Daniel Roe (Fri Jan 21 2022 - 15:46:28 PST)
- Robert Molt (Tue Jan 18 2022 - 17:22:14 PST)
- Daniel Roe (Tue Jan 18 2022 - 17:21:12 PST)
[AMBER] Inquiry on LJ parameters in .mdl file for 3D-RISM
- Alexis Azucena (Mon Jan 17 2022 - 17:33:07 PST)
- tluchko (Mon Jan 17 2022 - 11:02:34 PST)
- Alexis Azucena (Sun Jan 16 2022 - 22:42:17 PST)
[AMBER] Installing amber20 in conda
- David A Case (Thu Jan 20 2022 - 04:07:37 PST)
- Ming Tang (Wed Jan 19 2022 - 22:02:10 PST)
[AMBER] Issue concerning the AMBER/TeraChem interface
- Vinicius Wilian Cruzeiro (Thu Jan 27 2022 - 20:40:31 PST)
- Jiang, Yaoyukun (Thu Jan 27 2022 - 19:56:00 PST)
[AMBER] Li salt parameterisation issue
- Damiano Spadoni (Mon Jan 03 2022 - 08:05:31 PST)
[AMBER] LIE calculation with distance-based mask - reg.
- Naveen Kumar Vasudevan (Wed Jan 26 2022 - 17:25:52 PST)
[AMBER] lipid modification to a nucleic acid base
- Carlos Simmerling (Wed Jan 05 2022 - 04:49:09 PST)
- Daniel Konstantinovsky (Tue Jan 04 2022 - 11:54:21 PST)
[AMBER] low-water system, bad NPT and NVT
- Carlos Simmerling (Mon Jan 17 2022 - 16:38:29 PST)
- Daniel Konstantinovsky (Mon Jan 17 2022 - 15:01:09 PST)
[AMBER] MCPB, atom mismatch and naming problem
- Matthew Guberman-Pfeffer (Tue Jan 11 2022 - 08:42:53 PST)
[AMBER] MCPB.py error in GAMESS-US calculations
- ABDUL BASIT (Sat Jan 08 2022 - 05:51:00 PST)
[AMBER] MEOHBOX/CHCL3BOX not working
- Matthew Guberman-Pfeffer (Mon Jan 24 2022 - 14:21:49 PST)
- Daniel Konstantinovsky (Mon Jan 24 2022 - 14:17:54 PST)
- Matthew Guberman-Pfeffer (Mon Jan 24 2022 - 13:59:32 PST)
- Daniel Konstantinovsky (Mon Jan 24 2022 - 13:41:54 PST)
[AMBER] Multi-GPU Bug in Amber20
- James Kress (Tue Jan 11 2022 - 19:34:47 PST)
- David A Case (Tue Jan 11 2022 - 18:15:54 PST)
- James Kress (Tue Jan 11 2022 - 15:57:03 PST)
- James Kress (Tue Jan 11 2022 - 12:14:55 PST)
- Ross Walker (Tue Jan 11 2022 - 11:22:57 PST)
- James Kress (Tue Jan 11 2022 - 10:51:51 PST)
[AMBER] Multi-GPU oddity
- James Kress (Sun Jan 09 2022 - 15:30:11 PST)
[AMBER] Need help with SMD
- Carlos Simmerling (Mon Jan 17 2022 - 09:41:31 PST)
- natalia francisca rodriguez cabello (Mon Jan 17 2022 - 08:33:31 PST)
[AMBER] Negative DIHEDRAL_PERIODICITY in prmtop for amber20-benchmark FactorIX benchmark
- David A Case (Wed Jan 26 2022 - 12:34:53 PST)
- David A Case (Wed Jan 26 2022 - 07:08:27 PST)
- Dr. Anselm Horn (Wed Jan 26 2022 - 03:15:06 PST)
- John Chodera (Tue Jan 25 2022 - 14:06:35 PST)
- David A Case (Mon Jan 24 2022 - 13:43:22 PST)
- Piotr Cieplak (Mon Jan 24 2022 - 12:39:44 PST)
- David A Case (Mon Jan 24 2022 - 06:47:41 PST)
- John Chodera (Sun Jan 23 2022 - 18:58:51 PST)
[AMBER] NETCDF problem
- Björn Karlsson (Fri Jan 14 2022 - 09:51:52 PST)
- David A Case (Fri Jan 14 2022 - 08:38:28 PST)
- Björn Karlsson (Fri Jan 14 2022 - 05:27:46 PST)
- David A Case (Fri Jan 14 2022 - 05:13:34 PST)
- Björn Karlsson (Fri Jan 14 2022 - 01:28:00 PST)
[AMBER] Non-standard residue parameterization questions
- Matthew Guberman-Pfeffer (Sat Jan 01 2022 - 09:39:09 PST)
[AMBER] number of waters near a mask (K+) cpptraj
- Vaibhav Dixit (Thu Jan 13 2022 - 06:32:58 PST)
- Daniel Roe (Thu Jan 13 2022 - 05:43:03 PST)
- Vaibhav Dixit (Wed Jan 12 2022 - 22:38:55 PST)
[AMBER] Parameterize SO4
- zz sheng (Fri Jan 21 2022 - 05:48:25 PST)
- Matthew Guberman-Pfeffer (Thu Jan 20 2022 - 21:57:57 PST)
- zz sheng (Thu Jan 20 2022 - 19:24:20 PST)
- Matthew Guberman-Pfeffer (Thu Jan 20 2022 - 04:50:00 PST)
- David A Case (Thu Jan 20 2022 - 04:05:09 PST)
- zz sheng (Wed Jan 19 2022 - 21:37:41 PST)
[AMBER] Problem in mmpbsa calculation
- Rakesh Roy (Sun Jan 09 2022 - 21:46:47 PST)
[AMBER] Problem with reading a mol2 file into tleap
- David A Case (Fri Jan 07 2022 - 18:04:45 PST)
[AMBER] Problems with mdgx torsion parameters fitting - possible bug with polymers?
- David Cerutti (Mon Jan 10 2022 - 09:43:51 PST)
- Casalini Tommaso (Sun Jan 09 2022 - 23:51:49 PST)
[AMBER] Protein + DNA, which FF?
- Alan (Mon Jan 17 2022 - 02:05:26 PST)
- Alan (Mon Jan 17 2022 - 01:50:18 PST)
[AMBER] QM / MM module query
- Aashish Bhatt (Wed Jan 19 2022 - 10:19:02 PST)
- David A Case (Thu Jan 13 2022 - 06:27:40 PST)
- Aashish Bhatt (Thu Jan 13 2022 - 02:56:32 PST)
[AMBER] Question on REMD on GPU/CPU
- Vinicius Wilian Cruzeiro (Tue Jan 11 2022 - 21:01:49 PST)
- Suchetana Gupta (Tue Jan 11 2022 - 20:22:02 PST)
[AMBER] Reg: PLP - LYS parameters
- Gerald Monard (Mon Jan 10 2022 - 16:42:43 PST)
- Lara rajam (Mon Jan 10 2022 - 11:47:14 PST)
[AMBER] regading no tortion terms
- MIRA JHAWAR (Tue Jan 11 2022 - 20:12:23 PST)
- David A Case (Tue Jan 11 2022 - 18:07:56 PST)
- MIRA JHAWAR (Tue Jan 11 2022 - 07:30:52 PST)
- MIRA JHAWAR (Tue Jan 11 2022 - 06:20:52 PST)
- David A Case (Tue Jan 11 2022 - 06:15:37 PST)
- MIRA JHAWAR (Tue Jan 11 2022 - 04:03:43 PST)
- MIRA JHAWAR (Mon Jan 10 2022 - 08:03:14 PST)
- MIRA JHAWAR (Mon Jan 10 2022 - 06:29:42 PST)
- Dr. Anselm Horn (Mon Jan 10 2022 - 06:15:41 PST)
- David A Case (Mon Jan 10 2022 - 06:14:12 PST)
- MIRA JHAWAR (Mon Jan 10 2022 - 04:08:02 PST)
- MIRA JHAWAR (Sun Jan 09 2022 - 22:12:35 PST)
- MIRA JHAWAR (Sun Jan 09 2022 - 22:08:55 PST)
- David A Case (Tue Jan 04 2022 - 06:04:37 PST)
- MIRA JHAWAR (Tue Jan 04 2022 - 03:22:34 PST)
[AMBER] Regarding targeted md
- Carlos Simmerling (Thu Jan 27 2022 - 03:50:43 PST)
- Pranabesh Mandal (PhD, Bioinformatics August-2019) (Wed Jan 26 2022 - 23:27:37 PST)
- Carlos Simmerling (Tue Jan 25 2022 - 04:17:16 PST)
- Pranabesh Mandal (PhD, Bioinformatics August-2019) (Mon Jan 24 2022 - 20:30:36 PST)
[AMBER] Request for Extra Points Functionality
- Matthew Guberman-Pfeffer (Thu Jan 13 2022 - 22:01:04 PST)
[AMBER] RESP doesn't incorporate charge constraint
- Matthew Guberman-Pfeffer (Fri Jan 07 2022 - 11:18:02 PST)
- Daniel Konstantinovsky (Fri Jan 07 2022 - 11:12:25 PST)
- Matthew Guberman-Pfeffer (Fri Jan 07 2022 - 10:42:28 PST)
- Daniel Konstantinovsky (Fri Jan 07 2022 - 09:54:42 PST)
[AMBER] RESP giving ridiculous charges
- Dr. Anselm Horn (Wed Jan 12 2022 - 02:23:25 PST)
- Daniel Konstantinovsky (Tue Jan 11 2022 - 11:59:43 PST)
[AMBER] RESP VS ESP charge fitting
- Nagar, Hemant (Sat Jan 08 2022 - 17:39:22 PST)
[AMBER] Restraint file for amber20 with pmemd.cuda implementation
- David A Case (Tue Jan 25 2022 - 10:11:24 PST)
- Carlos Simmerling (Tue Jan 25 2022 - 07:26:00 PST)
- Prithviraj Nandigrami (Tue Jan 25 2022 - 07:16:34 PST)
- David A Case (Tue Jan 25 2022 - 06:06:04 PST)
- Prithviraj Nandigrami (Mon Jan 24 2022 - 14:24:21 PST)
- Carlos Simmerling (Mon Jan 24 2022 - 13:46:26 PST)
- Prithviraj Nandigrami (Mon Jan 24 2022 - 13:31:04 PST)
[AMBER] Restraint removal doesn't seem to be happening
- David A Case (Wed Jan 19 2022 - 05:06:27 PST)
- Daniel Burns (Sat Jan 15 2022 - 09:44:28 PST)
- Daniel Burns (Sat Jan 15 2022 - 06:17:42 PST)
- David A Case (Fri Jan 14 2022 - 18:55:11 PST)
- Daniel Burns (Fri Jan 14 2022 - 16:29:10 PST)
- Rafał Madaj (Fri Jan 14 2022 - 01:24:22 PST)
- Daniel Burns (Thu Jan 13 2022 - 07:30:04 PST)
- David A Case (Thu Jan 13 2022 - 06:02:57 PST)
- Daniel Burns (Wed Jan 12 2022 - 13:42:04 PST)
[AMBER] Running AmberTools21 on HPC cluster using distributed memory
- Manuel Fernandez Merino (Thu Jan 13 2022 - 06:54:46 PST)
- David A Case (Thu Jan 13 2022 - 06:18:26 PST)
- Manuel Fernandez Merino (Thu Jan 13 2022 - 01:23:50 PST)
- David A Case (Wed Jan 12 2022 - 06:05:41 PST)
- Manuel Fernandez Merino (Wed Jan 12 2022 - 01:28:56 PST)
[AMBER] Single Point Energy: sander x python sander
- David A Case (Fri Jan 14 2022 - 05:20:38 PST)
- Alan (Fri Jan 14 2022 - 03:42:17 PST)
- Alan (Fri Jan 14 2022 - 03:31:07 PST)
- David A Case (Thu Jan 13 2022 - 09:37:01 PST)
- Ray Luo (Thu Jan 13 2022 - 09:06:18 PST)
- Alan (Thu Jan 13 2022 - 08:16:13 PST)
- David A Case (Thu Jan 13 2022 - 06:25:52 PST)
- Alan (Thu Jan 13 2022 - 01:26:51 PST)
[AMBER] SMD
- Jacopo Sgrignani (Wed Jan 12 2022 - 00:37:45 PST)
[AMBER] SMD negative distance
- Jacopo Sgrignani (Mon Jan 10 2022 - 07:17:02 PST)
[AMBER] sqm performance: does it run in parallel?
- Alan (Sat Jan 01 2022 - 02:51:57 PST)
[AMBER] The application of QM/MMGBSA in the evaluation of protein stability, is it reasonable?
- Xinheng He (Thu Jan 13 2022 - 22:32:49 PST)
[AMBER] The effect of water box size for TI free energy calculation
- zz sheng (Wed Jan 26 2022 - 21:17:57 PST)
[AMBER] Thermodynamic integration equilibration
- Gian Marco ELISI (Wed Jan 12 2022 - 03:23:01 PST)
[AMBER] TIP4PD water box error
- David A Case (Sun Jan 02 2022 - 10:08:23 PST)
[AMBER] tleap error: "expected 'default'"
- Matthew Guberman-Pfeffer (Fri Jan 07 2022 - 16:41:03 PST)
- Daniel Konstantinovsky (Fri Jan 07 2022 - 14:17:07 PST)
- Matthew Guberman-Pfeffer (Fri Jan 07 2022 - 13:50:30 PST)
[AMBER] Torsion parameters
- Cenk Andac (Fri Jan 28 2022 - 06:13:33 PST)
- Karl Kirschner (Fri Jan 28 2022 - 04:59:23 PST)
- Cenk Andac (Fri Jan 28 2022 - 04:30:26 PST)
[AMBER] Umbrella Sampling Collective Variable
- Volkan Findik (Wed Jan 26 2022 - 23:25:09 PST)
[AMBER] Why SANDER can't rotate the dihedral for some angles? [Metal Center]
- Erdem Yeler (Fri Jan 07 2022 - 16:28:52 PST)
- David A Case (Mon Jan 03 2022 - 07:27:33 PST)
- Erdem Yeler (Sat Jan 01 2022 - 14:38:15 PST)
regarding no tortion terms
- MIRA JHAWAR (Tue Jan 04 2022 - 03:17:26 PST)

Amber Archive Jan 2022 by subject