Re: [AMBER] Reg: PLP - LYS parameters

From: Gerald Monard <>
Date: Tue, 11 Jan 2022 09:42:43 +0900


A little old now, but you can check the supplementary information of where you will find
leap instructions to create a non-standard residue of PLP linked to LYS.
Hope it helps,
Best regards,

On Tue, Jan 11, 2022 at 4:47 AM Lara rajam <> wrote:

> Dear AMBER,
> I am interested in generating a simulation for PLP linked LYS for my
> protein.
> I have gone through the forum got the same question asked in 2018
> ( But I am not able to find
> the solution for it. Can anyone let me know what needs to be done?.
> Can I follow the non standard residue tutorial if so , how do I need to
> take the combined residue atoms for Gaff ?
> Any information will be appreciated.
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Received on Mon Jan 10 2022 - 17:00:03 PST
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