Re: [AMBER] regading no tortion terms

From: David A Case <>
Date: Tue, 11 Jan 2022 21:07:56 -0500

On Tue, Jan 11, 2022, MIRA JHAWAR wrote:

>x = loadmol2 morin.mol2

This looks wrong: your residue appears to called "MOL" in the pdb file.
So you need to use something like "MOL = loadmol2 morin.mol2"

You can use the "list" command after the loadmol2 command to see what units
(residues) are loaded, and "desc" command to see what is inside your
MOL residue.

>Warning: Unknown residue: MOL number: 170 type: Terminal/beginning

You get this because of the problem listed above: you haven't loaded any
residue called "MOL"


p.s. don't forget that you need to get charges for MOL, probably via

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Received on Tue Jan 11 2022 - 18:30:02 PST
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