Re: [AMBER] lipid modification to a nucleic acid base

From: Carlos Simmerling <>
Date: Wed, 5 Jan 2022 07:49:09 -0500

are you asking how to build coordinates, or how to make a force field for
it? Amber isn't really designed to make structures for arbitrary molecules,
but you could use a program like Chimera or others that let you build or
modify a molecule.

On Tue, Jan 4, 2022 at 2:54 PM Daniel Konstantinovsky <> wrote:

> Hi Amber Community!
> I want to create a custom DNA base/residue with a lipid tail modification.
> I don't have a crystal structure to start with. Is there an easy way to do
> this with an AMBER tool, perhaps using NAB?
> Thank you!
> Dan
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Received on Wed Jan 05 2022 - 05:00:03 PST
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