Dear members,
I am trying to perform a molecular dynamics simulation of a protein with
four Mn2+ present in the binding site. The non bonded parameters are
downloaded from the AMBER parameter database (.dat and .prp file).
I am new to amber and I don't know how to use those files for multiple
non-bonded Mn2+ ions and perform the md simulation in amber.
I appreciate all help and look forward to any responses from you.
Thank you
Pranabesh Mandal
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jan 05 2022 - 04:00:02 PST
