Amber Archive Jan 2008 by author
310 messages
:
Starting
Wed Jan 02 2008 - 06:07:27 PST,
Ending
Sun Feb 03 2008 - 06:07:20 PST
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abiram abiram
AMBER: Unable to create the top & crd files for a protein+ligand pdb structure
(Fri Jan 11 2008 - 23:54:01 PST)
Adrian Roitberg
Re: AMBER: QM/MM Heating
(Mon Jan 21 2008 - 08:13:18 PST)
Re: AMBER: input options for replica exchange simulations
(Thu Jan 10 2008 - 09:28:50 PST)
Re: AMBER: temperature spikes
(Sun Jan 06 2008 - 08:41:50 PST)
Re: AMBER: About RAMD
(Sat Jan 05 2008 - 09:47:33 PST)
Age.Skjevik.student.uib.no
AMBER: NPT to NVT
(Tue Jan 15 2008 - 05:58:22 PST)
Re: AMBER: problems with restart of MD
(Fri Jan 11 2008 - 10:16:00 PST)
Andrew Ring
Re: AMBER: benchmark walltime to ps/day calculation
(Thu Jan 31 2008 - 13:16:22 PST)
AMBER: benchmark walltime to ps/day calculation
(Thu Jan 31 2008 - 12:11:05 PST)
Andrey Semichaevsky
AMBER: Re: timestep problem
(Thu Jan 17 2008 - 10:24:00 PST)
anna.schrey.gmx.de
Re: AMBER: problem with group input
(Mon Jan 21 2008 - 06:22:48 PST)
Anthony Cruz
Re: AMBER: chromophore parameters for Molecular Dynamics
(Wed Jan 16 2008 - 05:47:42 PST)
AMBER: chromophore parameters for Molecular Dynamics
(Fri Jan 11 2008 - 07:32:31 PST)
backy
AMBER: The energy minimization of SIngle RNA chain
(Thu Jan 10 2008 - 00:33:20 PST)
Bertrand P. S. Russell
Re: AMBER: AMBER installation problem
(Sat Jan 26 2008 - 07:53:43 PST)
Biman Jana
AMBER: RMSD calculation using AMBER7
(Sat Jan 19 2008 - 05:16:46 PST)
Binbin Liu
AMBER: NMROPT=1 in minimisation
(Sat Jan 05 2008 - 15:38:51 PST)
Boutheina Kerkeni
AMBER: graphite
(Fri Jan 11 2008 - 03:26:58 PST)
Brendan Duggan
AMBER: offset residue numbering
(Mon Jan 07 2008 - 12:14:30 PST)
brmeher.iitg.ernet.in
AMBER: AMBER-8 parallel installation - test run failure
(Thu Jan 03 2008 - 02:10:58 PST)
Carlos Simmerling
Re: AMBER: How to determine the basic parameters of a Replica Exchange Molecular Dynamics(REMD?
(Tue Jan 29 2008 - 04:21:37 PST)
Re: AMBER: RMSD calculation using AMBER7
(Sat Jan 19 2008 - 06:19:45 PST)
Re: AMBER: Regarding neutral Arginine unit
(Tue Jan 15 2008 - 08:28:21 PST)
Re: AMBER: input options for replica exchange simulations
(Thu Jan 10 2008 - 12:50:18 PST)
Re: AMBER: input options for replica exchange simulations
(Thu Jan 10 2008 - 08:57:12 PST)
Re: AMBER: Cluster analysis
(Mon Jan 07 2008 - 08:18:22 PST)
Re: AMBER: Structure comparison-NMR and X-ray structure using AMBER9
(Mon Jan 07 2008 - 08:16:16 PST)
Re: AMBER: About RAMD
(Sat Jan 05 2008 - 08:46:32 PST)
Re: AMBER: About RAMD
(Sat Jan 05 2008 - 08:12:40 PST)
Re: Re: AMBER: Combine mdcrd
(Fri Jan 04 2008 - 09:56:04 PST)
Re: Re: AMBER: Combine mdcrd
(Fri Jan 04 2008 - 09:30:31 PST)
Re: AMBER: Combine mdcrd
(Fri Jan 04 2008 - 08:44:55 PST)
Re: AMBER: Combine mdcrd files
(Thu Jan 03 2008 - 15:09:23 PST)
Cen Gao
AMBER: Thermodynamic integration with positional restraint?
(Thu Jan 03 2008 - 08:43:32 PST)
Chris Moth
AMBER:
(Wed Jan 16 2008 - 07:11:07 PST)
Re: AMBER: Torsional Forcing to generate PES?
(Tue Jan 08 2008 - 09:08:12 PST)
Re: AMBER: MD of protein-ligand comlex
(Mon Jan 07 2008 - 04:10:23 PST)
Christopher Gaughan
AMBER: mm/pbsa and saltcon effect
(Fri Jan 04 2008 - 13:40:17 PST)
D.Usharani
AMBER: Reg cysteine protonation states
(Tue Jan 29 2008 - 19:58:22 PST)
AMBER: Reg cysteine protonaitons states in pH constant MD
(Sun Jan 27 2008 - 21:15:58 PST)
d90223013.ntu.edu.tw
AMBER: How to determine the basic parameters of a Replica Exchange Molecular Dynamics(REMD?
(Mon Jan 28 2008 - 23:35:08 PST)
AMBER: Number of Hydrogen Bonds?
(Thu Jan 24 2008 - 17:07:39 PST)
darkcz.tlen.pl
AMBER: solvateBox/solvateDontClip
(Tue Jan 08 2008 - 08:02:19 PST)
David A. Case
Re: AMBER: Back on track
(Wed Jan 30 2008 - 17:33:46 PST)
Re: AMBER: Why LEap created a new H atom for CYM while generating TOPOLOGY file?
(Mon Jan 28 2008 - 08:11:02 PST)
Re: AMBER: AMBER installation problem
(Mon Jan 28 2008 - 08:06:54 PST)
Re: AMBER: QM/MM: input conversion error
(Fri Jan 25 2008 - 14:59:35 PST)
Re: AMBER: Tough time with antechamber
(Thu Jan 24 2008 - 18:25:33 PST)
Re: AMBER: NMR refinement
(Thu Jan 24 2008 - 18:18:48 PST)
Re: AMBER: Tough time with antechamber
(Thu Jan 24 2008 - 10:42:56 PST)
Re: AMBER: Problems in execution of Replica Exchange calculations Amber 9.0
(Thu Jan 24 2008 - 09:25:09 PST)
Re: AMBER: antechamber run on charged system
(Wed Jan 23 2008 - 10:37:06 PST)
Re: AMBER: Installing OpenMPI
(Wed Jan 23 2008 - 09:07:46 PST)
Re: AMBER: regarding :scee
(Wed Jan 23 2008 - 08:45:07 PST)
Re: AMBER: vlimit exceeded error
(Wed Jan 23 2008 - 08:29:18 PST)
Re: AMBER: distorted aromatic rings
(Wed Jan 23 2008 - 08:24:15 PST)
Re: AMBER: Amber 9: Question regarding Test Failures and Compilers
(Wed Jan 23 2008 - 08:22:04 PST)
Re: AMBER: NMR refinement
(Sat Jan 19 2008 - 10:39:08 PST)
Re: ?????? RE: AMBER: A problem to loadup the molecular in the xleap
(Sat Jan 19 2008 - 10:17:16 PST)
Re: AMBER: NMR refinement
(Fri Jan 18 2008 - 09:35:37 PST)
Re: AMBER: Tinker 4.3
(Fri Jan 18 2008 - 09:07:50 PST)
Re: AMBER: NMR refinement
(Fri Jan 18 2008 - 09:11:54 PST)
Re: AMBER: Re: timestep problem
(Thu Jan 17 2008 - 12:27:56 PST)
Re: AMBER: Problem with: Increase lastrst in the &cntrl namelist
(Wed Jan 16 2008 - 08:46:35 PST)
Re: AMBER: How to build a dimer using amber
(Tue Jan 15 2008 - 09:18:14 PST)
Re: AMBER: How to build a dimer using amber
(Mon Jan 14 2008 - 23:51:50 PST)
Re: AMBER: ELAN_EXCEPTION . --: 6 (Initialisation error) ELAN_EXCEPTION . --: 6 (Initialisation error)
(Sun Jan 13 2008 - 22:16:31 PST)
Re: AMBER: build RNA by nucgen
(Sun Jan 13 2008 - 09:56:32 PST)
Re: AMBER: problem:capping
(Sun Jan 13 2008 - 09:10:55 PST)
Re: AMBER: connectivity lose during the minimizations
(Sat Jan 12 2008 - 12:28:37 PST)
Re: AMBER: offset residue numbering
(Fri Jan 11 2008 - 23:10:08 PST)
Re: AMBER: ANTECHAMBER NAMING
(Thu Jan 10 2008 - 19:32:30 PST)
Re: AMBER: NMROPT=1 in minimisation
(Sun Jan 06 2008 - 12:59:03 PST)
Re: AMBER: MM-PBSA problem
(Fri Jan 04 2008 - 18:07:07 PST)
Re: AMBER: check COM velocity
(Fri Jan 04 2008 - 08:29:09 PST)
Re: AMBER: Thermodynamic integration with positional restraint?
(Thu Jan 03 2008 - 09:31:19 PST)
David Cerutti
Re: AMBER: Tough time with antechamber
(Thu Jan 24 2008 - 10:55:48 PST)
AMBER: Tough time with antechamber (UPDATE, still need help)
(Thu Jan 24 2008 - 00:09:42 PST)
AMBER: Tough time with antechamber
(Wed Jan 23 2008 - 23:29:38 PST)
Re: AMBER: Has anyone seen a protein fall apart due to PBCs?
(Tue Jan 22 2008 - 11:13:42 PST)
AMBER: Has anyone seen a protein fall apart due to PBCs?
(Tue Jan 22 2008 - 08:10:10 PST)
David Mobley
Re: AMBER: convergence of free energy calculations
(Thu Jan 24 2008 - 10:20:35 PST)
Re: AMBER: Tough time with antechamber
(Thu Jan 24 2008 - 10:14:42 PST)
Re: AMBER: about AM1-BCC in antechamber
(Fri Jan 18 2008 - 14:21:44 PST)
DawsonSean
AMBER:
(Wed Jan 16 2008 - 00:52:07 PST)
Ed Pate
AMBER: problem with group input
(Sun Jan 20 2008 - 22:53:28 PST)
fatima.chami.durham.ac.uk
AMBER: LEAP: solute concentration
(Thu Jan 31 2008 - 07:12:24 PST)
Re: AMBER: problem to compile PMEMD?
(Tue Jan 29 2008 - 16:10:48 PST)
AMBER: problem to compile PMEMD?
(Tue Jan 29 2008 - 14:45:41 PST)
Re: AMBER: Amber parallel version on CPU power of 2 only
(Tue Jan 29 2008 - 13:04:56 PST)
RE: AMBER: Amber parallel version on CPU power of 2 only
(Tue Jan 29 2008 - 10:19:22 PST)
AMBER: Amber parallel version on CPU power of 2 only
(Tue Jan 29 2008 - 05:38:34 PST)
Florian Haberl
Re: AMBER: amber :antechamber problem
(Mon Jan 07 2008 - 08:33:02 PST)
Francesco Pietra
AMBER: Reference for rmsd
(Mon Jan 28 2008 - 09:51:02 PST)
Re: AMBER: Installing OpenMPI
(Wed Jan 23 2008 - 10:18:44 PST)
AMBER: Re: Systematic drift
(Tue Jan 22 2008 - 23:23:07 PST)
AMBER: Systematic drift
(Tue Jan 22 2008 - 14:06:46 PST)
AMBER: Fwd: Distorsion in protein and ligand during MD
(Sun Jan 13 2008 - 01:57:43 PST)
AMBER: Distorsion in protein and ligand during MD
(Sun Jan 13 2008 - 01:46:23 PST)
AMBER: Cluster analysis
(Mon Jan 07 2008 - 08:00:40 PST)
Re: AMBER: About RAMD
(Sat Jan 05 2008 - 08:26:01 PST)
AMBER: About RAMD
(Sat Jan 05 2008 - 02:39:44 PST)
Re: Re: AMBER: Combine mdcrd
(Fri Jan 04 2008 - 13:26:32 PST)
Fwd: Re: AMBER: Combine mdcrd
(Fri Jan 04 2008 - 09:36:49 PST)
Fwd: Re: AMBER: Combine mdcrd
(Fri Jan 04 2008 - 09:23:45 PST)
Re: AMBER: Combine mdcrd
(Fri Jan 04 2008 - 09:07:15 PST)
AMBER: Combine mdcrd
(Fri Jan 04 2008 - 08:37:07 PST)
AMBER: Combine mdcrd files
(Thu Jan 03 2008 - 15:01:47 PST)
FyD
Re: AMBER: RESP
(Wed Jan 30 2008 - 21:47:38 PST)
Re: AMBER: flexible molecule parameterization
(Sun Jan 27 2008 - 06:09:37 PST)
Re: AMBER: PEO-PLA/PCE
(Fri Jan 18 2008 - 12:42:06 PST)
Re: AMBER: Help in radii
(Wed Jan 16 2008 - 12:31:07 PST)
Re: AMBER: chromophore parameters for Molecular Dynamics
(Wed Jan 16 2008 - 06:59:31 PST)
Re: AMBER: chromophore parameters for Molecular Dynamics
(Fri Jan 11 2008 - 12:57:19 PST)
Re: AMBER: ANTECHAMBER NAMING
(Thu Jan 10 2008 - 23:53:04 PST)
Re: AMBER: RESP
(Wed Jan 09 2008 - 23:39:01 PST)
Re: AMBER: RESP
(Tue Jan 08 2008 - 11:49:31 PST)
Re: AMBER: ff03-compatible parameters/charges for phosphothreonine and phosphotyrosine
(Fri Jan 04 2008 - 02:34:00 PST)
Re: AMBER: Help reg. input file
(Wed Jan 02 2008 - 12:21:03 PST)
Re: AMBER: Help reg. input file
(Wed Jan 02 2008 - 11:34:40 PST)
Re: AMBER: ff03-compatible parameters/charges for phosphothreonine and phosphotyrosine
(Wed Jan 02 2008 - 00:52:15 PST)
gurpreet singh
Re: AMBER: antechamber problem
(Thu Jan 10 2008 - 20:05:38 PST)
AMBER: antechamber problem
(Thu Jan 10 2008 - 09:49:15 PST)
Hans Martin Senn
AMBER: GAFF atom types for flavin (again)
(Thu Jan 17 2008 - 12:47:54 PST)
Hopkins, Robert
Re: AMBER: Installing OpenMPI
(Wed Jan 23 2008 - 16:40:22 PST)
AMBER: Installing OpenMPI
(Tue Jan 22 2008 - 15:57:49 PST)
AMBER: Amber DNA Model for X-ray Crystallography
(Fri Jan 11 2008 - 15:32:00 PST)
Irene Newhouse
RE: AMBER: Has anyone seen a protein fall apart due to PBCs?
(Tue Jan 22 2008 - 09:28:44 PST)
Jack Lei
Re: AMBER: Why LEap created a new H atom for CYM while generating TOPOLOGY file?
(Mon Jan 28 2008 - 06:35:06 PST)
AMBER: Why LEap created a new H atom for CYM while generating TOPOLOGY file?
(Mon Jan 28 2008 - 04:59:38 PST)
Re: AMBER: Number of Hydrogen Bonds?
(Fri Jan 25 2008 - 05:20:53 PST)
Re: AMBER: MM-PBSA problem
(Fri Jan 04 2008 - 17:31:05 PST)
Jan Schulze
AMBER: Amber 9: Question regarding Test Failures and Compilers
(Wed Jan 23 2008 - 02:01:04 PST)
jani sahil
Re: AMBER: regarding :scee
(Wed Jan 23 2008 - 20:37:48 PST)
AMBER: regarding :scee
(Wed Jan 23 2008 - 07:50:45 PST)
AMBER: Regarding neutral Arginine unit
(Tue Jan 15 2008 - 08:19:00 PST)
AMBER: Amber : neutralizing without adding ions
(Mon Jan 14 2008 - 03:43:01 PST)
AMBER: problem in neturalization
(Sat Jan 12 2008 - 19:27:31 PST)
AMBER: problem:capping
(Sat Jan 12 2008 - 18:53:24 PST)
AMBER: antechamber problems
(Fri Jan 04 2008 - 19:49:10 PST)
AMBER: amber :antechamber problem
(Fri Jan 04 2008 - 19:51:56 PST)
Jed W Pitera
Re: AMBER: diblock copolymer
(Tue Jan 22 2008 - 17:01:03 PST)
Jianyin Shao
Re: AMBER: ptraj: new mask parser
(Thu Jan 24 2008 - 09:23:53 PST)
Jiapu.Zhang.csiro.au
RE: AMBER: Number of Hydrogen Bonds?
(Thu Jan 24 2008 - 17:35:04 PST)
Jiten
Re: AMBER: Unable to create the top & crd files for a protein+ligand pdb structure
(Sat Jan 12 2008 - 00:21:01 PST)
John Chodera
AMBER: ff03-compatible parameters/charges for phosphothreonine and phosphotyrosine
(Tue Jan 01 2008 - 17:44:34 PST)
Jojart Balazs
Re: AMBER: running AMBER in NAMD Trucated Octahedron
(Mon Jan 14 2008 - 14:31:05 PST)
Jun Liu
AMBER: AMBER installation problem
(Fri Jan 25 2008 - 10:59:29 PST)
JunJun Liu
Re: AMBER: problems of antechamber
(Tue Jan 22 2008 - 06:45:26 PST)
Junmei Wang
Re: AMBER: Tough time with antechamber
(Thu Jan 24 2008 - 15:49:51 PST)
Re: AMBER: Tough time with antechamber
(Thu Jan 24 2008 - 07:23:08 PST)
Re: AMBER: about AM1-BCC in antechamber
(Tue Jan 22 2008 - 09:56:55 PST)
Re: AMBER: about AM1-BCC in antechamber
(Fri Jan 18 2008 - 21:31:06 PST)
Re: AMBER: GAFF atom types for flavin (again)
(Thu Jan 17 2008 - 21:21:21 PST)
Re: AMBER: problems of antechamber
(Thu Jan 17 2008 - 21:24:52 PST)
Re: AMBER: antechamber problem
(Thu Jan 10 2008 - 10:29:23 PST)
Re: AMBER: connectivity problem
(Thu Jan 10 2008 - 07:27:07 PST)
Re: AMBER: connectivity problem
(Wed Jan 09 2008 - 07:51:05 PST)
Re: AMBER: A problem about antechamber
(Tue Jan 08 2008 - 14:19:15 PST)
Re: AMBER: antechamber problems
(Sat Jan 05 2008 - 21:35:04 PST)
Re: AMBER: question about antechamber
(Thu Jan 03 2008 - 07:18:34 PST)
Keith Van Nostrand
Re: AMBER: Using VMD to calculate end-to-end distance?
(Mon Jan 14 2008 - 19:35:42 PST)
Re: AMBER: Nudged Elastic Band initial heating problem
(Tue Jan 08 2008 - 05:32:31 PST)
Lars Skjærven
Re: AMBER: Amber : neutralizing without adding ions
(Mon Jan 14 2008 - 07:41:55 PST)
Re: AMBER: check COM velocity
(Fri Jan 04 2008 - 08:36:53 PST)
Lili Peng
AMBER: radial distribution function in ptraj
(Tue Jan 29 2008 - 01:36:37 PST)
AMBER: Units of atomicfluct
(Wed Jan 23 2008 - 16:27:16 PST)
AMBER: Using VMD to calculate end-to-end distance?
(Mon Jan 14 2008 - 14:41:55 PST)
liu junjun
Re: AMBER: problems of antechamber
(Sun Jan 20 2008 - 07:21:49 PST)
AMBER: problems of antechamber
(Thu Jan 17 2008 - 18:15:54 PST)
Lynn
AMBER: question about antechamber
(Thu Jan 03 2008 - 06:32:56 PST)
M. L. Dodson
Re: AMBER: QM/MM: input conversion error
(Fri Jan 25 2008 - 12:56:38 PST)
Re: AMBER: QM/MM: input conversion error
(Thu Jan 24 2008 - 11:25:03 PST)
Re: AMBER: QM/MM: input conversion error
(Thu Jan 24 2008 - 10:31:44 PST)
Marc Cozzi
AMBER: Amber9 fails test.parallel
(Wed Jan 30 2008 - 10:58:41 PST)
Marc Lindner
Re: AMBER: mmpbsa binding energy
(Thu Jan 24 2008 - 02:16:23 PST)
AMBER: distorted aromatic rings
(Wed Jan 23 2008 - 02:40:20 PST)
Marcin Krol
AMBER: disulfide bridge with ff03ua FF
(Thu Jan 31 2008 - 10:30:56 PST)
Marie Brut
AMBER: Atomic restraints
(Mon Jan 21 2008 - 05:34:42 PST)
Mark Williamson
Re: AMBER: Amber9 fails test.parallel
(Wed Jan 30 2008 - 12:04:31 PST)
Melinda Layten
Re: AMBER: Has anyone seen a protein fall apart due to PBCs?
(Tue Jan 22 2008 - 10:43:23 PST)
Mike Summers
AMBER: Back on track
(Mon Jan 28 2008 - 17:39:32 PST)
Mike Wykes
AMBER: Nudged Elastic Band initial heating problem
(Tue Jan 08 2008 - 02:42:09 PST)
Ming Lei
Re: AMBER: AMBER-8 parallel installation - test run failure
(Thu Jan 03 2008 - 06:08:46 PST)
nag raj
AMBER: Entropy calculation
(Thu Jan 31 2008 - 04:47:51 PST)
AMBER: Entropy calculation
(Wed Jan 30 2008 - 01:51:26 PST)
Neko Maryam.
Re: AMBER: ELAN_EXCEPTION . --: 6 (Initialisation error) ELAN_EXCEPTION . --: 6 (Initialisation error)
(Sun Jan 13 2008 - 22:54:28 PST)
Re: AMBER: ELAN_EXCEPTION . --: 6 (Initialisation error) ELAN_EXCEPTION . --: 6 (Initialisation error)
(Sun Jan 13 2008 - 22:23:58 PST)
AMBER: ELAN_EXCEPTION . --: 6 (Initialisation error) ELAN_EXCEPTION . --: 6 (Initialisation error)
(Sun Jan 13 2008 - 21:44:10 PST)
Pankaj R. Daga
AMBER: SANDER BOMB in subroutine nonbond_list
(Wed Jan 30 2008 - 07:13:45 PST)
RE: AMBER: QM/MM: input conversion error
(Fri Jan 25 2008 - 14:02:47 PST)
RE: AMBER: QM/MM: input conversion error
(Fri Jan 25 2008 - 12:11:24 PST)
RE: AMBER: QM/MM: input conversion error
(Thu Jan 24 2008 - 11:05:31 PST)
AMBER: QM/MM: input conversion error
(Thu Jan 24 2008 - 10:11:36 PST)
RE: AMBER: problems with restart of MD
(Fri Jan 11 2008 - 10:34:13 PST)
AMBER: check COM velocity
(Fri Jan 04 2008 - 08:06:26 PST)
Paulo Couto
AMBER: Tinker 4.3
(Fri Jan 18 2008 - 07:22:25 PST)
Praveena Gopal
AMBER: Torsional Forcing to generate PES?
(Mon Jan 07 2008 - 20:42:04 PST)
Prem Prakash Pathak
AMBER: Structure comparison-NMR and X-ray structure using AMBER9
(Mon Jan 07 2008 - 08:11:22 PST)
priya priya
AMBER: vlimit exceeded error
(Wed Jan 23 2008 - 03:27:37 PST)
rams rams
AMBER: connectivity lose during the minimizations
(Sat Jan 12 2008 - 03:40:21 PST)
Re: AMBER: connectivity problem
(Wed Jan 09 2008 - 21:04:41 PST)
AMBER: connectivity problem
(Wed Jan 09 2008 - 06:53:55 PST)
Raphael Chaleil
AMBER: pmemd 9.0 compilation error
(Mon Jan 14 2008 - 06:38:12 PST)
rdauria.uci.edu
Re: AMBER: Problem with: Increase lastrst in the &cntrl namelist
(Wed Jan 16 2008 - 10:19:27 PST)
AMBER: Problem with: Increase lastrst in the &cntrl namelist
(Tue Jan 15 2008 - 20:46:04 PST)
rebeca.mmb.pcb.ub.es
AMBER: Problems in execution of Replica Exchange calculations Amber 9.0
(Thu Jan 24 2008 - 08:50:22 PST)
Re: AMBER: input options for replica exchange simulations
(Thu Jan 10 2008 - 10:00:10 PST)
AMBER: input options for replica exchange simulations
(Thu Jan 10 2008 - 08:46:42 PST)
Reena .....
Re: AMBER:
(Wed Jan 16 2008 - 01:07:30 PST)
Re: AMBER: How to build a dimer using amber
(Tue Jan 15 2008 - 01:31:24 PST)
Re: AMBER: How to build a dimer using amber
(Tue Jan 15 2008 - 01:29:03 PST)
AMBER: How to build a dimer using amber
(Mon Jan 14 2008 - 23:19:45 PST)
Robert Duke
Re: AMBER: problem to compile PMEMD?
(Tue Jan 29 2008 - 18:11:57 PST)
Re: AMBER: problem to compile PMEMD?
(Tue Jan 29 2008 - 18:10:49 PST)
Re: AMBER: problem to compile PMEMD?
(Tue Jan 29 2008 - 15:09:05 PST)
Re: AMBER: Amber parallel version on CPU power of 2 only
(Tue Jan 29 2008 - 10:43:03 PST)
Re: AMBER: pmemd 9.0 compilation error
(Mon Jan 14 2008 - 07:19:51 PST)
Re: AMBER: About RAMD
(Sat Jan 05 2008 - 09:05:55 PST)
Ross Walker
RE: AMBER: SANDER BOMB in subroutine nonbond_list
(Wed Jan 30 2008 - 08:20:51 PST)
RE: AMBER: QM/MM Heating
(Tue Jan 29 2008 - 06:49:48 PST)
RE: AMBER: Amber parallel version on CPU power of 2 only
(Tue Jan 29 2008 - 06:39:21 PST)
RE: AMBER: QM/MM: input conversion error
(Fri Jan 25 2008 - 14:48:49 PST)
RE: AMBER: QM/MM: input conversion error
(Thu Jan 24 2008 - 16:01:43 PST)
RE: AMBER: BCC charges
(Tue Jan 22 2008 - 09:16:05 PST)
RE: AMBER: QM/MM Heating
(Mon Jan 21 2008 - 08:41:31 PST)
RE: AMBER: problems with restart of MD
(Sat Jan 12 2008 - 18:58:20 PST)
RE: AMBER: problems with restart of MD
(Fri Jan 11 2008 - 11:56:16 PST)
RE: AMBER: Nudged Elastic Band initial heating problem
(Tue Jan 08 2008 - 15:00:59 PST)
AMBER: FW: AMBER vs Gaussian : zero VDW parameters?
(Fri Jan 04 2008 - 09:01:14 PST)
RE: AMBER: Combine mdcrd files
(Fri Jan 04 2008 - 08:35:23 PST)
Sally Pias
AMBER: temperature spikes
(Sat Jan 05 2008 - 22:26:55 PST)
Sampath Koppole
Re: AMBER: AMBER installation problem
(Mon Jan 28 2008 - 00:36:27 PST)
san_amber roy
AMBER: antechamber run on charged system
(Wed Jan 23 2008 - 10:09:34 PST)
saurabh agrawal
AMBER: convergence of free energy calculations
(Tue Jan 22 2008 - 03:54:28 PST)
Seth Lilavivat
AMBER: NMR refinement
(Thu Jan 24 2008 - 09:39:08 PST)
AMBER: running AMBER in NAMD Trucated Octahedron
(Mon Jan 14 2008 - 14:19:05 PST)
AMBER: Visualizing Electrostatic Potential
(Fri Jan 11 2008 - 11:57:31 PST)
AMBER: Combining multiple structures into single pdb
(Fri Jan 04 2008 - 12:21:58 PST)
Shozeb Haider
AMBER: ANTECHAMBER NAMING
(Thu Jan 10 2008 - 13:19:18 PST)
Shun Zhu
Re: AMBER: about AM1-BCC in antechamber
(Tue Jan 22 2008 - 10:09:49 PST)
Re: AMBER: about AM1-BCC in antechamber
(Tue Jan 22 2008 - 09:38:01 PST)
AMBER: about AM1-BCC in antechamber
(Fri Jan 18 2008 - 14:06:30 PST)
snoze pa
Re: AMBER: antechamber run on charged system
(Wed Jan 23 2008 - 11:34:04 PST)
Re: AMBER: Help in radii
(Wed Jan 16 2008 - 09:45:20 PST)
AMBER: Help in radii
(Wed Jan 16 2008 - 09:08:59 PST)
Re: AMBER: Help reg. input file
(Wed Jan 02 2008 - 11:50:50 PST)
AMBER: Help reg. input file
(Wed Jan 02 2008 - 10:34:56 PST)
stephane acoca
AMBER: MM-PBSA problem
(Thu Jan 03 2008 - 19:45:10 PST)
Steve Spronk
RE: AMBER: Why LEap created a new H atom for CYM while generating TOPOLOGY file?
(Mon Jan 28 2008 - 05:47:39 PST)
Steven Winfield
Re: AMBER: benchmark walltime to ps/day calculation
(Thu Jan 31 2008 - 12:34:49 PST)
Re: AMBER: QM/MM Heating
(Wed Jan 23 2008 - 04:30:11 PST)
Re: AMBER: QM/MM Heating
(Mon Jan 21 2008 - 05:48:22 PST)
AMBER: QM/MM Heating
(Mon Jan 14 2008 - 07:22:27 PST)
Subramanian Arun Kumar
AMBER: Help needed to analyze DNA Holliday Junction - Drug Binding MD simulations.
(Thu Jan 24 2008 - 09:14:56 PST)
Syed Tarique Moin
AMBER: (no subject)
(Wed Jan 30 2008 - 21:31:24 PST)
Re: AMBER: RESP
(Thu Jan 10 2008 - 01:15:15 PST)
Re: AMBER: RESP
(Wed Jan 09 2008 - 22:36:05 PST)
AMBER: RESP
(Tue Jan 08 2008 - 04:40:21 PST)
AMBER: RESP
(Tue Jan 08 2008 - 04:41:56 PST)
AMBER: RESP
(Tue Jan 08 2008 - 04:41:06 PST)
AMBER: RESP
(Tue Jan 08 2008 - 04:40:03 PST)
Re: AMBER: MD of protein-ligand comlex
(Sun Jan 06 2008 - 22:18:20 PST)
Thomas Cheatham III
Re: AMBER: Has anyone seen a protein fall apart due to PBCs?
(Tue Jan 22 2008 - 08:37:03 PST)
Re: AMBER: using hydrogen bond facility to monitor ion pair interaction
(Thu Jan 10 2008 - 09:21:10 PST)
Thomas Exner
Re: AMBER: BCC charges
(Wed Jan 23 2008 - 02:11:36 PST)
AMBER: BCC charges
(Tue Jan 22 2008 - 07:47:20 PST)
umbrita itl
AMBER: MD of protein-ligand comlex
(Sun Jan 06 2008 - 12:54:47 PST)
Urszula Uciechowska
AMBER: tutorial_8_section_6
(Wed Jan 23 2008 - 09:04:38 PST)
Vijay Manickam Achari
AMBER: setting periodic box
(Tue Jan 29 2008 - 20:22:05 PST)
Vijay Singh
Re: AMBER: problems with restart of MD
(Sun Jan 13 2008 - 11:53:11 PST)
Re: AMBER: problems with restart of MD
(Sun Jan 13 2008 - 07:45:25 PST)
Re: AMBER: problems with restart of MD
(Sat Jan 12 2008 - 01:48:39 PST)
Re: AMBER: problems with restart of MD
(Fri Jan 11 2008 - 12:04:39 PST)
AMBER: problems with restart of MD
(Fri Jan 11 2008 - 09:29:31 PST)
Vlad Cojocaru
Re: AMBER: ptraj: new mask parser
(Thu Jan 24 2008 - 10:19:25 PST)
AMBER: ptraj: new mask parser
(Wed Jan 23 2008 - 03:59:24 PST)
WANG,YING
Re: AMBER: a question of ptraj
(Wed Jan 02 2008 - 10:04:24 PST)
Wei Chen
Re: AMBER: amber :antechamber problem
(Mon Jan 07 2008 - 08:14:53 PST)
Wenyong Tong
Re: AMBER: NMR refinement
(Fri Jan 18 2008 - 20:18:18 PST)
AMBER: NMR refinement
(Thu Jan 17 2008 - 18:54:04 PST)
Yong Duan
RE: AMBER: Has anyone seen a protein fall apart due to PBCs?
(Tue Jan 22 2008 - 19:20:41 PST)
AMBER: RE: 回复： RE: AMBER: A problem to loadup the molecular in the xleap
(Sat Jan 19 2008 - 12:44:25 PST)
RE: AMBER: A problem to loadup the molecular in the xleap
(Fri Jan 18 2008 - 22:17:35 PST)
AMBER: RE: 回复： AMBER: RE: 回复： AMBER: RE: 回复： AMBER: RE: 回复： RE: AMBER: Disturb you for help !?=
(Wed Jan 16 2008 - 08:13:15 PST)
AMBER: RE: 回复： AMBER: RE: 回复： AMBER: RE: 回复： RE: AMBER: Disturb you for help !?=
(Tue Jan 15 2008 - 20:16:10 PST)
AMBER: RE: 回复： AMBER: RE: 回复： RE: AMBER: Disturb you for help !?=
(Mon Jan 14 2008 - 23:40:39 PST)
AMBER: RE: 回复： RE: AMBER: Disturb you for help !?=
(Mon Jan 14 2008 - 20:14:26 PST)
RE: AMBER: Disturb you for help!
(Mon Jan 14 2008 - 12:06:11 PST)
RE: AMBER: problems with restart of MD
(Mon Jan 14 2008 - 10:16:24 PST)
RE: AMBER: problems with restart of MD
(Sun Jan 13 2008 - 10:08:52 PST)
RE: AMBER: About RAMD
(Sat Jan 05 2008 - 11:24:53 PST)
Z Insepov
Re: AMBER: diblock copolymer
(Tue Jan 22 2008 - 21:23:39 PST)
AMBER: collision with surface
(Tue Jan 22 2008 - 16:25:55 PST)
AMBER: PEO-PLA/PCE
(Thu Jan 17 2008 - 12:19:47 PST)
AMBER: diblock copolymer
(Thu Jan 17 2008 - 07:27:47 PST)
Zhenwei Lu
AMBER: flexible molecule parameterization
(Fri Jan 25 2008 - 07:36:46 PST)
Re: AMBER: using hydrogen bond facility to monitor ion pair interaction
(Thu Jan 10 2008 - 10:16:57 PST)
AMBER: using hydrogen bond facility to monitor ion pair interaction
(Thu Jan 10 2008 - 09:09:09 PST)
捞毛 渔
回复： RE: AMBER: A problem to loadup the molecular in the xleap
(Sat Jan 19 2008 - 08:31:05 PST)
AMBER: A problem to loadup the molecular in the xleap
(Fri Jan 18 2008 - 21:28:02 PST)
回复： AMBER: RE: 回复： AMBER(wrong string) (wrong string) AMBER: RE: ظ RE: AMBER: Disturb you for help !?=
(Thu Jan 17 2008 - 07:33:28 PST)
回复： AMBER: RE: 回复： AMBER(wrong string) (wrong string) RE: AMBER: Disturb you for help !?=
(Wed Jan 16 2008 - 06:55:37 PST)
回复： AMBER: RE: 回复： AMBER: RE: 回复： RE: AMBER: Disturb you for help !?=
(Tue Jan 15 2008 - 17:24:30 PST)
回复： AMBER: RE: 回复： RE: AMBER: Disturb you for help !?=
(Mon Jan 14 2008 - 21:33:49 PST)
回复： RE: AMBER: Disturb you for help !?=
(Mon Jan 14 2008 - 16:12:27 PST)
AMBER: Disturb you for help!
(Mon Jan 14 2008 - 08:16:37 PST)
AMBER: A problem about antechamber
(Tue Jan 08 2008 - 08:03:49 PST)
AMBER: Problem about antechamber
(Tue Jan 08 2008 - 08:09:03 PST)
欧阳德方
AMBER: build RNA by nucgen
(Sat Jan 12 2008 - 18:26:44 PST)
Last message date
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Sun Feb 03 2008 - 06:07:20 PST
Archived on
: Fri Dec 20 2024 - 05:53:41 PST
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