AMBER: running AMBER in NAMD Trucated Octahedron

From: Seth Lilavivat <>
Date: Mon, 14 Jan 2008 17:19:05 -0500

Dear Amber Users,

I am running an AMBER simulation using NAMD. Is there a way to use the
trucated octahedron water box that I created using leap? If so, how would I
calculate the correct Cell Basis Vectors and PME Grid Size for my NAMD
configuration file correctly?


The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Wed Jan 16 2008 - 06:07:20 PST
Custom Search