AMBER: MD of protein-ligand comlex

From: umbrita itl <>
Date: Sun, 6 Jan 2008 12:54:47 -0800 (PST)

Hello amber users,

I have few questions. I am trying to get Molecular Dynamic receptor-ligand complex. I have never done MD on protein-ligand complex before.
 I am studying Streptavidin/Biotin Tutorial and I am confused about how to do it.
 Should I create a " frcmod " file for my system?
 I do not understand why biotin file is prepared in leap . I thought, for preparation of ligand we need use Antechamber.

Can someone please help?

Thank you very much for any sugestions.


Be a better friend, newshound, and know-it-all with Yahoo! Mobile. Try it now.
The AMBER Mail Reflector
To post, send mail to
To unsubscribe, send "unsubscribe amber" to
Received on Wed Jan 09 2008 - 06:07:07 PST
Custom Search